Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0593 ATGACTTCAAACTTACATCAGTATCCTGCACCTCTTGCTAGATATGAGGAGGTTACAACCAATCCCAAGCTCTTCATGGATACCTTGGAGAAGCTACACGCTGCTATGGGTACTAAGTTCATGATTCCCATTATTGGAGGAAAAGAACTAGATTTGTGTCGCCTCTTCGTTGAAGTGACTTCTCGTGGAGGAATTGAGAAGATTATCAAGGAGAGAAGATGGAAAGAAGTAACTTCAGTGTTCAATTTCCCATCAACAGCTACAAATGCTTCCTTTGTGCTACGGAAGTACTATTCTTCACTGCTTTACCACTATGAACAAATCTACTATTTCAAAGCCAGTAGATGGATCCCTGCAACTTCAGATGCTCTACGGGGACAATCAAACATCCAAGTTCCTGCTCAAAGAGCACCATTTTTGCAGCCTTCTCCTGGAATTCAATCAACTGCCTTTCAACAGTCAAGGGTTAATGCTGTTGAATTGCCTGAAGGGGCGGAGCCACAGGGAGACATGTGTGGCCATGGTCAATTTTTTTTTGGTCTTGGCCATCCAGTATCCAGAATCCGGATTTGGTATGGATCACCGGTGTTTGGAGTCATTGATGCAAAATTTGAAAGTGGCTATCTAGTTACTGTTTCAATAGGCTCAGAGCTGCTCAAAGGTGTGCTCTATCAGGATCCACAAGGTCCTTTGCTGCCTGCATTTCATCATCAAAGCATTATGGCCAAGAACAGCAATGCCTCTGCTCCTTTGGGTGTCCGCCGGCGCCGGCGCAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGCTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAACCACTACACCAAGCCAAGGACAGGGAGATTAGCAGGATGATTGGTGAATTGTGGAACAAGTTAAAAGAGCCTGAAAGATCAGTTTACCAAGAGAAGGCCATTAAGGATAAAGAGAGGTACAAAGCAGAAATGGAGGATTATAGGCAGAAACTGAGGATGAGTCAAGTCATCAGTGATGCAGTGCCACTGCAACAACGGCTTCCTGGACCTGACACAGCTGGTTTGGTGGATGTGGACATAAGATTGGATGATAATGAGGAGGTTGGTTCGGGTTCCCTTCAGACTCAAACTCCTGAGGAGAGTAGTTCTGGTGGAAGTGACAATGAGAATGATATCAATATGGATGATACTTCCTCTCCTAATGAGACTGGAATGGGAATTGGTGCTGAAACTGCATGTTTGACTCTGGACAAGACATCAAAAGAGGGGGATTATGAGCTTGGACATCAAAAGGTTCAGAAGATGGATGAGAGCAAAAATATGTTGGCACTGCTTTAG 1371 0.4427 MTSNLHQYPAPLARYEEVTTNPKLFMDTLEKLHAAMGTKFMIPIIGGKELDLCRLFVEVTSRGGIEKIIKERRWKEVTSVFNFPSTATNASFVLRKYYSSLLYHYEQIYYFKASRWIPATSDALRGQSNIQVPAQRAPFLQPSPGIQSTAFQQSRVNAVELPEGAEPQGDMCGHGQFFFGLGHPVSRIRIWYGSPVFGVIDAKFESGYLVTVSIGSELLKGVLYQDPQGPLLPAFHHQSIMAKNSNASAPLGVRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQAKDREISRMIGELWNKLKEPERSVYQEKAIKDKERYKAEMEDYRQKLRMSQVISDAVPLQQRLPGPDTAGLVDVDIRLDDNEEVGSGSLQTQTPEESSSGGSDNENDINMDDTSSPNETGMGIGAETACLTLDKTSKEGDYELGHQKVQKMDESKNMLALL* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0593 456 SMART hmgende2 271 340 IPR009071 -
Dod01g0593 456 Pfam ARID/BRIGHT DNA binding domain 23 106 IPR001606 GO:0003677
Dod01g0593 456 SMART bright_3 20 111 IPR001606 GO:0003677
Dod01g0593 456 Coils Coil 321 348 - -
Dod01g0593 456 MobiDBLite consensus disorder prediction 379 416 - -
Dod01g0593 456 SUPERFAMILY ARID-like 16 115 IPR036431 GO:0003677
Dod01g0593 456 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 411 - -
Dod01g0593 456 CDD ARID_HMGB9-like 21 106 IPR045303 GO:0003677
Dod01g0593 456 CDD HMGB-UBF_HMG-box 272 336 - -
Dod01g0593 456 Pfam HMG (high mobility group) box 272 339 IPR009071 -
Dod01g0593 456 Gene3D High mobility group box domain 256 351 IPR036910 -
Dod01g0593 456 SMART ARID_2 16 106 - -
Dod01g0593 456 MobiDBLite consensus disorder prediction 377 418 - -
Dod01g0593 456 MobiDBLite consensus disorder prediction 252 266 - -
Dod01g0593 456 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 272 339 IPR009071 -
Dod01g0593 456 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 411 - -
Dod01g0593 456 SUPERFAMILY HMG-box 260 343 IPR036910 -
Dod01g0593 456 MobiDBLite consensus disorder prediction 246 278 - -
Dod01g0593 456 Gene3D - 10 120 IPR036431 GO:0003677
Dod01g0593 456 ProSiteProfiles ARID domain profile. 19 110 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0593 Dod-Chr1 10508704 10512308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0593 10 359 ARID Transcription Factor Family AT1G04880 57.418 1.02e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dod01g0593 ARID 2.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0593 - - gmx:100783284 509.22