Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0553 ATGAAGATTAACGTGAAGACTCTCAAAGGAAGTCACTTCGAGATCGAAGTGAAACCGCAAGACACGGTTGCTGATGTGAAGAACAATATAGAGGCAGCACAAGGTGCTGATGTTTACCCTGCTGCACAACAAATGCTTATTTATCAGGGGAAAGTGCTTAAGGATGCCACTACACTGGAAGAGAACAAAGTTGCTGAGAATGGTTGTGTCGTGATCATGTTATCCAAGAGTAAGGTATCATCAAGTGGAGGGTCGACTGCATCATCTGCATCCGCAAATCAGGCAGCCCAACCTGCAAGTTCTTTGCCTCCAACTTCATTGTTGTCTTCAACATCTCAACCTCCTGCTTCGACTGTAGGACAGGGAGAATCTAATCCTGTGCAAATTCCTGTTATAACTCCTCCTGCTACTGATGTGTCTGGCGTCTATGGCCAAGCAGCATCAAATCTCATTTCTGGGAGTAATTTAGAATCAACAATCCAACAGATTTTAGACATGGGGGGAGGAAGTTGGGATCGGGATACTGTTATCCGTGCTCTTCGTGCGGCATTTAACAATCCTGAAAGAGCTGTTGAGTATCTGTATTCTGGCATTCCTGAACAAGCTGAAGTACCGGCAGCTGCCAGATCCCCCACTGTCGGGCAGGTGGCAAACCCTTCAGTCCAGGCTCCAGATCAAGCTGTACCCACTGGTGGGCCTAACACCAACCCACTCAACCTCTTCCCCCAGGGTATTCCCAATATGGGTACAGAAGAAAATGCAGGCGACTTGGATTTCTTGCGGAACAGTCAACAGTTCCAAGCCTTGAGAGCGATGGTGCAAGCAAACCCTAATATTTTGCAGCCCATGCTTCAGGAATTGGGAAAACAAAACCCACATCTAATGCAGCTCATTCAAGAGCATCAAGCTGATTTCTTACGCCTGATAAATGAACCTGAAGGACAAGGAGAAGAGAATCTACAGAGTCAGTTGGCTGCTGCAATGCCGCAGACCATTACTGTCACCCCGGAAGAAAATGAGGCTATTCAACGGCTTGAAGATATGGGATTTGATCGAGATCTTGTATTGGAGGTGTTCTTTGCATGCAACAAAAACGAGGATCTGGCAGCCAACTATCTTTTGGATCATCAGAATGAATTTGAGGACTAG 1149 0.4639 MKINVKTLKGSHFEIEVKPQDTVADVKNNIEAAQGADVYPAAQQMLIYQGKVLKDATTLEENKVAENGCVVIMLSKSKVSSSGGSTASSASANQAAQPASSLPPTSLLSSTSQPPASTVGQGESNPVQIPVITPPATDVSGVYGQAASNLISGSNLESTIQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEVPAAARSPTVGQVANPSVQAPDQAVPTGGPNTNPLNLFPQGIPNMGTEENAGDLDFLRNSQQFQALRAMVQANPNILQPMLQELGKQNPHLMQLIQEHQADFLRLINEPEGQGEENLQSQLAAAMPQTITVTPEENEAIQRLEDMGFDRDLVLEVFFACNKNEDLAANYLLDHQNEFED* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0553 382 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Dod01g0553 382 Coils Coil 373 382 - -
Dod01g0553 382 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 381 - -
Dod01g0553 382 Gene3D - 330 378 - -
Dod01g0553 382 Gene3D - 248 313 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dod01g0553 382 SMART CBM 255 298 IPR006636 -
Dod01g0553 382 MobiDBLite consensus disorder prediction 83 131 - -
Dod01g0553 382 CDD UBA1_Rad23_plant 150 199 - -
Dod01g0553 382 SMART uba_6 338 375 IPR015940 -
Dod01g0553 382 SMART uba_6 156 196 IPR015940 -
Dod01g0553 382 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
Dod01g0553 382 Pfam UBA/TS-N domain 156 194 IPR015940 -
Dod01g0553 382 Pfam UBA/TS-N domain 337 373 IPR015940 -
Dod01g0553 382 Pfam XPC-binding domain 257 312 IPR015360 GO:0003684|GO:0006289|GO:0043161
Dod01g0553 382 PRINTS DNA repair protein Rad23 signature 364 379 IPR004806 GO:0006289
Dod01g0553 382 PRINTS DNA repair protein Rad23 signature 349 363 IPR004806 GO:0006289
Dod01g0553 382 PRINTS DNA repair protein Rad23 signature 332 348 IPR004806 GO:0006289
Dod01g0553 382 PRINTS DNA repair protein Rad23 signature 283 305 IPR004806 GO:0006289
Dod01g0553 382 PANTHER UBIQUITIN RECEPTOR RAD23D-LIKE ISOFORM X1 1 381 - -
Dod01g0553 382 SUPERFAMILY UBA-like 152 205 IPR009060 GO:0005515
Dod01g0553 382 SMART ubq_7 1 75 IPR000626 GO:0005515
Dod01g0553 382 MobiDBLite consensus disorder prediction 83 133 - -
Dod01g0553 382 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 336 376 IPR015940 -
Dod01g0553 382 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 154 197 IPR015940 -
Dod01g0553 382 SUPERFAMILY UBA-like 320 379 IPR009060 GO:0005515
Dod01g0553 382 SUPERFAMILY XPC-binding domain 254 318 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dod01g0553 382 Gene3D - 149 199 - -
Dod01g0553 382 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Dod01g0553 382 TIGRFAM rad23: UV excision repair protein Rad23 1 381 IPR004806 GO:0006289
Dod01g0553 382 Gene3D - 1 80 - -
Dod01g0553 382 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0553 Dod-Chr1 9774511 9780005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0553 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.486 2.69e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0553 K10839 - jre:108987083 514.998