Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0549 ATGCGGATGAGCTGCAATGGATGCAGGGTGCTACGAAAAGGGTGCAGCGAGAACTGCAGCATAAGGCCATGCTTGCAGTGGATCAAGAGCCCAGAATCACAAGCCAATGCCACCGTGTTCCTCGCCAAGTTCTATGGTCGTGCTGGCCTCATGAACCTCGTCAACGCTGGCCCCGAACACCTTCGTCCAGCTATTTTTCGTTCGTTGCTGTACGAGGCATGCGGTCGGATAGTGAACCCAATCTACGGTTCGGTGGGTCTGTTGTGGTCGGGGAGCTGGCAGCTCTGCCAAGCCGCCGTAGAAGCCGTCCTGAAAGGCGCGCCGATCACGCCGATTACCTGCGAAGCTGCCGCCAACGGGCAGGGCCCACCCCTCAAGCCCTACGACATACGCCACGTGTGCAAGGACGAGTCGAACTCGGCCGCGTCGGCTCAGCAGCAGCGAGGCAAGACTCGCTCCCGCGTCAAGAAGCGGTCTCAATCCCAAGCTAAGCCCAAACAAAGCAACGACGAAGACAAGGGAACCGGAACAACCAAGTTGGTTCACGTCGAACCGGACTCGGCTCGCGATGATGAGGTGATGAACCGGTCTGGGAGTCACGACTCGTCGCTGAGTCACCAGTCCGAGTCGGCGAACGTTGCGGCGGAGGGAGAGAGCAAGGAGAGCGAGAGCACGGTGGATACGGCAGAGGCTTCGGTTCTTTTTAGGGATGAACCGGAATCGAACCGGAAGCGCGTGGACCGAACCGATGACGGTGGTGACGTTCTTGGTCTTGAGCTGACGCTGGGGTTCGAACCGGTGGTCTCTTCGTCACGTGCGGAGCATGTGGTGCCGGTTAAGAAGAGAAGGATTGAATTGGTGGATTGTGGTGTTGGGCTTGGGCTTGAGTAA 891 0.5859 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITCEAAANGQGPPLKPYDIRHVCKDESNSAASAQQQRGKTRSRVKKRSQSQAKPKQSNDEDKGTGTTKLVHVEPDSARDDEVMNRSGSHDSSLSHQSESANVAAEGESKESESTVDTAEASVLFRDEPESNRKRVDRTDDGGDVLGLELTLGFEPVVSSSRAEHVVPVKKRRIELVDCGVGLGLE* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0549 296 MobiDBLite consensus disorder prediction 233 250 - -
Dod01g0549 296 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Dod01g0549 296 MobiDBLite consensus disorder prediction 163 197 - -
Dod01g0549 296 PIRSF AS2 1 289 IPR017414 -
Dod01g0549 296 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 280 - -
Dod01g0549 296 MobiDBLite consensus disorder prediction 137 250 - -
Dod01g0549 296 MobiDBLite consensus disorder prediction 198 219 - -
Dod01g0549 296 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 280 - -
Dod01g0549 296 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0549 Dod-Chr1 9593618 9595932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0549 1 284 AS2 family AT3G02550 59.930 2.82e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod01g0549 LOB 1.5e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0549 01 9593618 9595932 Dod01g0549 01 9593618 9595932 ECH
Dod06g0184 06 2747063 2748612 Dod01g0549 01 9593618 9595932 ECH