Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0492 ATGCCTAGTGTTACTCAATCTGATCATTTTGGATTGAAGCTTGACCAAAGCCCTAAAGCTGAAAACTTGTTGCCAACTGATGTTGGAAAATTGTACAAGGATGAGATTGATCAGTTTATGCAAATAATAAATGGGAATGAATCATTAAAAAAGTATGCTGTCACCATAATTGAGAAGACAAAAGGAGATGTTAATAAGGCATTGGATATATATTACTGTAATTCTGGCAATCTTTGTAAAAATGAAATATCAGTTCAAGCAGAGTGCAACAATGACAGCTCCTTAGAGGAGAATTATGTATCACAAGAATTGAGAGCTATACCTGATACTATACCAGATACTACTGTGCAGAGAGCATTAAGAGACAATGCAACTCATGTAACTCTACCACTTGAGGAATACAATCCTAAAGAGCATGCGTGTTGGAGAGAAGGACAGCCTGCACCGTATTTACTTCTTGCACGAACGTTCAACCTTCTAGAGGATGAGAAAGGAAAGATAAAAGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGCAGATGTGTTGCCTGCTGTGTATCTATGTACAAACAAAATTGCTGCAGACCATGAAAATATGGAACTAAATATTGGTGGAAGTATAGTTACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGATCAAAAATAAAGGAGATGTATAACAAGTTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCAACACCACTTCTAATTAAGGATGTTTTCTCTGCCCTACAAAAGATAAGTGTACAAACAGGCCATGGAAGCACGTCTCGAAAGAAAGGTATTATGGTTCATCTCATGCGTTCCTGTCGTGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTCAGGAATCTAAGGATTGGGGCAATGCTTAGAACTGTTTTACCTGCATTGGCTCAAGCTGTTGTAATGAATTCTTGCCCTACTGTGCACCAAGAAGGAACTACTGAATATTGGAAGGAGAAGCTTCAGGTCCTTTCTAGGGAAGTTGTTGAAGCATATAACATACTTCCAAATTTGGATCTCATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCGGTTTCAAGTTTGTCAATGGTTCCAGGAATCCCAATTAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGCGTTAAAGCTATTTCAAAATAAGGCATTTTCTTGTGAATGCAAGTATGATGGTCAGCGAGCTCAAATTCACAGACTAATTGACGGATCAATTCGTATTTTTTCAAGAAATGGAGATGAATCAACGTCAAGATTTCCTGATCTGATTGGCATAATTAGGGAATCCTGCAAGCCTGTTGCATTGACTTTCGTAATTGATGCGGAAGTTGTTGGTATTGATAGGAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGAAGAGGAAGCAAAGATACTTTAGTTACTTCGGAGAGCATAAAGGTGGACATTTGCATCTTTGTCTTTGATATCATGTTTGCAAATGGAGAGCAGCTATTGTGTTTTCCTCTCCGCTCAAGACGAGAGTATCTTAAGGATTTATTCTATGACGAGAGACCAGGGTATTTTGAATATGCAAAGGAAATAACTATTGAAGCAGATGATGCTTGCGTAACTTGTGAGGCCACGTTATCAAAGATGAATGCTTTCTTGGAAGACGCACTTCAGTCTTCATGTGAAGGAATTATGGTGAAAACGTTGGACGTTGATGCTGGTTATTCTCCATCAAAGCGTTCTGATAAATGGCTAAAGGTCAAGCGAGATTATGTGGAAGGTTTGAACGATACTCTTGATTTAGTACCAATTGGCGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGCTACAATCCTGAAACTGAGGAGTATCAAAGTGTATGTCGTGTGATGTCTGGGTTCTCAGATTCATTTTACATAGAGATGAAAGAATTATTCTCTGGGGACAAAATCTTGTCCAAAAGGCCGCCTTATTATCGAACATCAGAGGAGCCTGACATGTGGTTTTGTCCCCAATTAGTTTGGGAGATAAGAGGTGCAGACTTCACAGTGTCCCCTGTTCATCATGCAGCCATTGGTTTAGTTCATCCATCGCGAGGCATCTCTATCAGGTTTCCGAGATTCATACGCTGTGTGTCGGACAGAAACCCAGAAGAATGTAGTACAGCTGCAGATATAGTTGAAATGTTTCATTCTCAGACAAGGAAGATGGATGTCACAGCTGAAGATTGA 2337 0.3988 MPSVTQSDHFGLKLDQSPKAENLLPTDVGKLYKDEIDQFMQIINGNESLKKYAVTIIEKTKGDVNKALDIYYCNSGNLCKNEISVQAECNNDSSLEENYVSQELRAIPDTIPDTTVQRALRDNATHVTLPLEEYNPKEHACWREGQPAPYLLLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKIAADHENMELNIGGSIVTAALEEACGTNRSKIKEMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGHGSTSRKKGIMVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAQAVVMNSCPTVHQEGTTEYWKEKLQVLSREVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFSCECKYDGQRAQIHRLIDGSIRIFSRNGDESTSRFPDLIGIIRESCKPVALTFVIDAEVVGIDRKNGYRIMSFQELSSRGRGSKDTLVTSESIKVDICIFVFDIMFANGEQLLCFPLRSRREYLKDLFYDERPGYFEYAKEITIEADDACVTCEATLSKMNAFLEDALQSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKELFSGDKILSKRPPYYRTSEEPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFIRCVSDRNPEECSTAADIVEMFHSQTRKMDVTAED* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0492 778 Gene3D DNA ligase/mRNA capping enzyme 424 555 - -
Dod01g0492 778 Gene3D - 406 619 - -
Dod01g0492 778 Gene3D - 620 777 IPR012340 -
Dod01g0492 778 CDD OBF_DNA_ligase_I 624 767 - -
Dod01g0492 778 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 207 765 IPR000977 GO:0003910|GO:0005524|GO:0071897
Dod01g0492 778 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 8 775 - -
Dod01g0492 778 Pfam ATP dependent DNA ligase C terminal region 641 749 IPR012309 GO:0003910|GO:0006281|GO:0006310
Dod01g0492 778 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 419 427 IPR016059 GO:0003909
Dod01g0492 778 Pfam ATP dependent DNA ligase domain 395 615 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Dod01g0492 778 Gene3D - 127 397 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dod01g0492 778 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 351 617 - -
Dod01g0492 778 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 129 378 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dod01g0492 778 PANTHER DNA LIGASE 3 8 775 - -
Dod01g0492 778 ProSiteProfiles ATP-dependent DNA ligase family profile. 506 653 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Dod01g0492 778 SUPERFAMILY Nucleic acid-binding proteins 624 768 IPR012340 -
Dod01g0492 778 CDD Adenylation_DNA_ligase_I_Euk 386 618 - -
Dod01g0492 778 Pfam DNA ligase N terminus 150 325 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0492 Dod-Chr1 8727806 8736640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0492 133 768 Core DNA Replication Machinery Family AT1G08130 39.342 5.11e-171 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0492 - - gmx:100807673 1344.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0492 01 8727806 8736640 Dod01g0492 01 8727806 8736640 ECH