Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0488 ATGGCCTTGCAGAACATTGGTGCTGGTAACAGTGATGATGCCTTCTACAGATATAAGATGCCTAAAATGGTTACCAAAATTGAGGGTAGAGGTAATGGCATCAAAACTAATATTGTGAACATGGTTGATATTGCAAAAGCCTTGGCTAGGCCAGCCTCTTACACAACCAAATATTTTGGTTGTGAACTTGGAGCCCAATCAAAATTTGACGAGAAAACTGGCACTTCTCATGTTAATGGGGCACATGATACAGCAAAACTTGCTGGCCTTCTTGAGAACTTCATTAAGAAATATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGGTCATTATTACTAAGAGTCAAATGATCCAGCTGAAATGTGCTGCTTGCGGTTTTGTGTCTGATGTTGATATGAGAGACAAGCTGACATCCTTTATCATCAAGAACCCTCCAGAAGTAAAGAAAGGTTCCAAAAACAATAAGGCCATGAGGAGAGCTGAGAAGGAGAGACTAAAGGAAGGTGAAGTAGCTGATGAGGAGCACAAAAAACTGAAGAAGGAGGTTAAGAAAAAGGGCTCTTCATATTCAAAGGATGGCACTACGAAATCTGGCTCTTCAAAGAAGAAAGCTAATGGCTCTGATGAAGACCGAACATCTCCTGCCCACAGTCAAATTGATGAAAAAGAGGAGGCTCATGATGAGGATGATGATGTACAGTGGCAAACAGATACATCACTAGAGGCTGCTCGCCAACGCATCGAAGAACAGTTGAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACAAATGAAACTGAGAAGAAAAAGAAGGAGGAGAGGGAGAAGGAACCGAGAAAGGTAAGTGATAATTCTGAGAATGGCAACTCCATGCACTATAGGACAGTGGTTGGGGAAGTGAAAGCAAAGTTGGAGAAAGGTGTTTCTGCAAAGGAATTGCAGTCCCATCTGGCGGCACTTCCTGCCACTGCTCAGGAGAAGATCAGTGGTTTATATGAAGCCTTATTCGATGGCATTGAAAAAGGGTTCGGGAAAGAGGCAACAAAGAAGAGGAGCTACCTTGCTGCTGCAGTTGCTGAGGAAGAAGGTTTGCAGTTGTTGTTGCTGAGTGCAATCGAGGAATTTTCTTGCAAGTCCACTTCGAATGCATTGAAGGAGGTTGCCCTGGTCTTGAAGGCACTCTATGATGCTGATGTATTGGAGGAAGAGCACATAGTGCAGTGGTATCAGAAAGGGCTGAAAGGTGATAACAAGGAGTCTATGATCTGGAAGAATGTTCGACCCTTCATTGATTGGCTCCAGACTGCGGAATCAGAGTCGGAGGAAGAGTGA 1338 0.4387 MALQNIGAGNSDDAFYRYKMPKMVTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEVIITKSQMIQLKCAACGFVSDVDMRDKLTSFIIKNPPEVKKGSKNNKAMRRAEKERLKEGEVADEEHKKLKKEVKKKGSSYSKDGTTKSGSSKKKANGSDEDRTSPAHSQIDEKEEAHDEDDDVQWQTDTSLEAARQRIEEQLSAVTADMVMLSTNETEKKKKEEREKEPRKVSDNSENGNSMHYRTVVGEVKAKLEKGVSAKELQSHLAALPATAQEKISGLYEALFDGIEKGFGKEATKKRSYLAAAVAEEEGLQLLLLSAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKESMIWKNVRPFIDWLQTAESESEEE* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0488 445 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Dod01g0488 445 ProSiteProfiles W2 domain profile. 288 445 IPR003307 GO:0005515
Dod01g0488 445 MobiDBLite consensus disorder prediction 146 235 - -
Dod01g0488 445 Pfam eIF4-gamma/eIF5/eIF2-epsilon 367 445 IPR003307 GO:0005515
Dod01g0488 445 Gene3D - 3 104 - -
Dod01g0488 445 SUPERFAMILY ARM repeat 295 439 IPR016024 -
Dod01g0488 445 MobiDBLite consensus disorder prediction 265 285 - -
Dod01g0488 445 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 445 IPR045196 GO:0003743|GO:0006413
Dod01g0488 445 Gene3D - 286 445 - -
Dod01g0488 445 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 1 445 - -
Dod01g0488 445 MobiDBLite consensus disorder prediction 150 225 - -
Dod01g0488 445 Gene3D - 105 145 - -
Dod01g0488 445 MobiDBLite consensus disorder prediction 256 292 - -
Dod01g0488 445 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Dod01g0488 445 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Dod01g0488 445 CDD W2_eIF5 333 443 - -
Dod01g0488 445 SMART 542_3 353 441 IPR003307 GO:0005515
Dod01g0488 445 Coils Coil 435 445 - -
Dod01g0488 445 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0488 Dod-Chr1 8699788 8702857 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0488 1 438 Eukaryotic Initiation Factors Gene Family AT1G36730 63.393 1.91e-178 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0488 K03262 - gmx:100778073 677.552