Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0486 ATGGCCTTGCAGAACATTGGTGCTAGTAACAGTGATGATGCCTTCTATAGGTATAAGATGCCTAAAATGATTACCAAAATTGAGGGTAGAGGTAATGGCATCAAAACTAATATTGTGAACATGGTTGATATTGCAAAAGCCTTGGCTCGGCCAGCTTCTTACACAACCAAGTATTTTGGTTGTGAACTTGGAGCCCAATCTAAATTTGATGAGAAAACTGGCACTTCTCATGTTAATGGGGCACATGAGACTGCAAAACTTGCTGGCCTTCTTGAGAACTTCATTAAGAAGTATGTCCAGTGTTACGGTTGTGGAAATCCTGAAACTGAGATCATTATTACTAAGAATCAAATGATTCAGCTGAAGTGTGCTGCATGTGGCTTTGTGTCTGATGTTGATATGAGAGACAAGTTGACTACCTTCATCATCAAGAACCCTCCTGAAGTAAAGAAAGGATCCAAAAACAATAAAGCCATGAGAAGAGCTGAGAAGGAAAGACTCAAGGAAGGTGAAGTAGCTGATGAGGAGCTGAAAAAACTGAAGAAGGAGGTTAAGAAGAAAGGCTCTTCATCTTCAAAGGATGGCACCACAAAATCTGGCTCTACGAAGAAGAAAGCTAATGGCTCTGATGAAGACCGTACATCCCCTACTCACAGTCAAATTGATGAGAGAGAGGCTGCTCATGATGAAGATGATGGTGATGTACAATGGCAAACAGATACATCACTAGAGGCTGCTCGTCAACGCATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACAAATGAATCTGAGAAGGAGGAGAAGAAGGAACCCAGTAAGCTAAGTGATAGTTCTGAGAATGGCAACTCCATGCACTATAGGACATTGGCTGGGGAAGTGAAAGCAAAGTTGGAGAAAGGTGTTTCTGCGAAGGAATTGCAGTCCCATCTTGCTGCACTTCCTACCACTGCTCAGGAAAAGATGAGTGCTTTATATGAAGCCTTATTCGATGGCATTGAAAAAGGGTTCGGGAAAGAGGCAACTAAGAAGAGGAGCTACCTTGCTGCTGCAGTTGCTGAGGAAGAGGGTTTGCAGTTGTTATTGCTGAGTGCTATTGAGGAATTTTCTTGCAAGTCCACTTCGGGTGCTTTGAAAGAGGTTGCCCTGGTTTTGAAGGCGCTCTATGATGCTGATGTGCTGGAGGAAGAGCACATAGTGCAGTGGTATCAAAACGGGCTGAAAGGTGATAACAAGGAATCTATGATCTGGAAGAATGTCAAACCCTTCGTTGATTGGCTCCAGACTGCGGAATCAGAGTCGGGGGAAGAGTAA 1329 0.4357 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKNNKAMRRAEKERLKEGEVADEELKKLKKEVKKKGSSSSKDGTTKSGSTKKKANGSDEDRTSPTHSQIDEREAAHDEDDGDVQWQTDTSLEAARQRIQEQLSAVTADMVMLSTNESEKEEKKEPSKLSDSSENGNSMHYRTLAGEVKAKLEKGVSAKELQSHLAALPTTAQEKMSALYEALFDGIEKGFGKEATKKRSYLAAAVAEEEGLQLLLLSAIEEFSCKSTSGALKEVALVLKALYDADVLEEEHIVQWYQNGLKGDNKESMIWKNVKPFVDWLQTAESESGEE* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0486 442 MobiDBLite consensus disorder prediction 266 290 - -
Dod01g0486 442 Gene3D - 2 104 - -
Dod01g0486 442 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Dod01g0486 442 SMART 542_3 350 438 IPR003307 GO:0005515
Dod01g0486 442 CDD W2_eIF5 325 439 - -
Dod01g0486 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 442 IPR045196 GO:0003743|GO:0006413
Dod01g0486 442 Pfam eIF4-gamma/eIF5/eIF2-epsilon 364 442 IPR003307 GO:0005515
Dod01g0486 442 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Dod01g0486 442 ProSiteProfiles W2 domain profile. 285 442 IPR003307 GO:0005515
Dod01g0486 442 SUPERFAMILY ARM repeat 292 436 IPR016024 -
Dod01g0486 442 MobiDBLite consensus disorder prediction 150 235 - -
Dod01g0486 442 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Dod01g0486 442 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Dod01g0486 442 MobiDBLite consensus disorder prediction 147 235 - -
Dod01g0486 442 Gene3D - 284 442 - -
Dod01g0486 442 MobiDBLite consensus disorder prediction 266 281 - -
Dod01g0486 442 Gene3D - 105 145 - -
Dod01g0486 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 1 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0486 Dod-Chr1 8666277 8668979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0486 1 435 Eukaryotic Initiation Factors Gene Family AT1G77840 62.162 1.21e-179 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0486 K03262 - gmx:100777906 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0486 01 8666277 8668979 Dod01g0486 01 8666277 8668979 ECH