Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0485 ATGGATGGACAAATTAAGTCATCTCCTAATATGCTGGTGCCTTGTCGAATCTGCCACAATGAAGATGAAGAATCAAACATGGAGATACCATGTTCTTGTTGTGGCACTATGAAGTATGCACATAGGAACTGTGTTCAAAGATGGTGCAGTGAGAAAGGTGATACTACATGTGAGATCTGCCTACAGCAATTTACACCCGGCTATACTGCACCCCCACCACATTCCCTGTTCCAATATGGTGGTTCTCTAATGAATTTTGGAGGGGATTATTGGGAGATTTCAAGAAGGGATATTCCTAATCATCATCAATTCATAGCCATGTTTGGTGCTAATCGCGAATTGCTAGACTATGACTTTGAATACTCAGCACCCTCTATAAGGACCCTGATATGCTGCCGCATTGTTGCCACTATCTTTATTGTGCTTCTTGTCTTGAGACATACACTTTCAGCTACACAGATACTCAGTGGAGCAGAAGAGTATTATTCATTAACAGTGTCTCTGTTACTAATGTTGGGAATTATTGGAGTAGTCGTGCCATTGTGTATAATGGTTAAAGTTAGTACTGCTATTCAACAACTTCAGTACCAGGATCATCATTCCCCTAGGTCATTACATGAGGAACATAATTTGGGGCGGTCTCAGCGGCGTTTCATTCATATTGGATGA 669 0.4126 MDGQIKSSPNMLVPCRICHNEDEESNMEIPCSCCGTMKYAHRNCVQRWCSEKGDTTCEICLQQFTPGYTAPPPHSLFQYGGSLMNFGGDYWEISRRDIPNHHQFIAMFGANRELLDYDFEYSAPSIRTLICCRIVATIFIVLLVLRHTLSATQILSGAEEYYSLTVSLLLMLGIIGVVVPLCIMVKVSTAIQQLQYQDHHSPRSLHEEHNLGRSQRRFIHIG* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0485 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 4 203 - -
Dod01g0485 222 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 4 203 IPR033275 -
Dod01g0485 222 Pfam Protein of unknown function (DUF3675) 66 186 IPR022143 -
Dod01g0485 222 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Dod01g0485 222 CDD RING_CH-C4HC3_MARCH 15 60 - -
Dod01g0485 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
Dod01g0485 222 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Dod01g0485 222 SUPERFAMILY RING/U-box 13 65 - -
Dod01g0485 222 SMART ringv_2 14 61 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0485 Dod-Chr1 8662540 8668979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0485 14 60 C3H Transcription Factor Family AT2G37950 48.000 1.35e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0485 - - gmx:100806609 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0485 01 8662540 8668979 Dod01g0485 01 8662540 8668979 ECH