Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0471 ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTGAAGGCTGGATTTGCTGGGGATGATGCCCCACGTGCTGTTTTCCCCAGCATTGTAGGTCGGCCTCGTCACACTGGTGTGATGGTAGGCATGGGACAAAAGGATGCATATGTTGGTGATGAGGCACAGTCTAAGAGGGGTATTCTGACTCTCAAGTACCCAATTGAGCACGGAATTGTGAGCAATTGGGATGACATGGAGAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTTGCCCCGGAAGAGCACCCTGTTTTGCTAACTGAGGCTCCTCTTAACCCCAAGGCTAATCGTGAGAAGATGACTCAAATCATGTTTGAGACTTTTAATGCCCCTGCTATGTATGTAGCCATCCAGGCCGTTCTTTCACTGTATGCCAGTGGTCGTACAACTGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATCTATGAGGGTTATGCTCTCCCACATGCCATCCTTCGTCTTGATCTCGCTGGCCGTGACCTCACTGATTTCTTGATGAAAATTCTTACTGAACGTGGGTATTCTTTCACCACCTCAGCAGAGCGGGAAATTGTGAGGGATGTGAAAGAAAAGCTGGCTTACATCGCCCTCGACTACGAGCAAGAGATAGAGACAGCCAAGACCAGCTCTTCCGTTGAGAAGAGCTACGAGTTGCCTGACGGGCAGGTCATCACTATTGGTGATGAACGTTTCAGATGCCCTGAGGTCCTGTTCCAACCATCCATGATAGGAATGGAAGCAGCAGGCATTCACTGA 834 0.488 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQEIETAKTSSSVEKSYELPDGQVITIGDERFRCPEVLFQPSMIGMEAAGIH* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0471 277 Gene3D - 4 153 - -
Dod01g0471 277 SUPERFAMILY Actin-like ATPase domain 149 277 IPR043129 -
Dod01g0471 277 Gene3D Actin; Chain A, domain 4 184 270 - -
Dod01g0471 277 PANTHER - 1 277 - -
Dod01g0471 277 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Dod01g0471 277 Pfam Actin 5 274 IPR004000 -
Dod01g0471 277 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Dod01g0471 277 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Dod01g0471 277 Gene3D Actin; Chain A, domain 2 36 73 - -
Dod01g0471 277 PANTHER ACTIN 1 277 IPR004000 -
Dod01g0471 277 Gene3D - 154 277 - -
Dod01g0471 277 PRINTS Actin signature 28 37 IPR004000 -
Dod01g0471 277 PRINTS Actin signature 51 62 IPR004000 -
Dod01g0471 277 PRINTS Actin signature 238 254 IPR004000 -
Dod01g0471 277 PRINTS Actin signature 142 161 IPR004000 -
Dod01g0471 277 PRINTS Actin signature 63 85 IPR004000 -
Dod01g0471 277 PRINTS Actin signature 117 130 IPR004000 -
Dod01g0471 277 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Dod01g0471 277 SMART actin_3 7 277 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0471 Dod-Chr1 8486843 8488160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0471 1 277 Cytoskeleton Gene Families AT3G12110 97.112 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0471 K10355 - gmx:100792119 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3319 02 68778040 68780266 Dod01g0471 01 8486843 8488160 PCT