Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0436 ATGGCAGCCGGCATGGACATGTCCCTCGACGAGATCATCAAGAGGTCCGCCGCCGCTCGCCGCCACGCCAGACCCTCGCATTCTGCCCCAGGCCCCGACCGCCGCACACCCCTTCGCGTCTCCACGCGAACCACGCCCTACTCCATCCCACAGGTGGGAAGGCAAATGCGGCAAGGGAGCGTTGTTCCATGTTCAGGATTAGGAGGAGTGGGAGTGCTTACGGGTCGTGATCATGGTCATAGCGCTGAAGCTGAAAGCGGCACCAAACTCTACATTTCTAACTTGGATTATGGGGTTTCTAACGGAGATATTAAGCTGCTGTTCTCAGAAGAGGGTGAATTGAAAAGATACTCCATTCATTATGACAAGAGTGGGAGATCAAAGGGAACTGCAGAAGTTGTCTATGCGAAGCAGTCTGATGCTATAGCAGCCATGAAGAAGTACAACAATATGAAGCTTGATGGAAAACCATTGCAAATTGAGCTAGTTGGAACAAATTGGTAG 504 0.5179 MAAGMDMSLDEIIKRSAAARRHARPSHSAPGPDRRTPLRVSTRTTPYSIPQVGRQMRQGSVVPCSGLGGVGVLTGRDHGHSAEAESGTKLYISNLDYGVSNGDIKLLFSEEGELKRYSIHYDKSGRSKGTAEVVYAKQSDAIAAMKKYNNMKLDGKPLQIELVGTNW* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0436 167 PANTHER THO COMPLEX SUBUNIT 4A-LIKE ISOFORM X1 1 166 - -
Dod01g0436 167 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 166 - -
Dod01g0436 167 SMART rrm1_1 89 161 IPR000504 GO:0003723
Dod01g0436 167 MobiDBLite consensus disorder prediction 15 40 - -
Dod01g0436 167 Gene3D - 74 166 IPR012677 -
Dod01g0436 167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Dod01g0436 167 SUPERFAMILY RNA-binding domain, RBD 82 162 IPR035979 GO:0003676
Dod01g0436 167 CDD RRM_THOC4 88 162 - -
Dod01g0436 167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0436 Dod-Chr1 7841160 7844506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0436 83 162 Eukaryotic Initiation Factors Gene Family AT1G71770 33.750 6.24e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0436 K12881 - cpap:110806943 171.4