Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0424 ATGAAGAGAGAAAGAGAGGTTGATCACATGATCATGGCAAATTGTTTGATGTTACTTTCCAGAGGGGGTGAGTTTGAGACCACCTACACTAGCTTTTCCAATAACAACCGTGTCTTTGAGTGCAAGACATGTAATAGGCAATTCCCTTCATTTCAAGCACTTGGTGGCCACAGGGCTAGCCACAAGAAGCCAAGGTTGATGGTAGAAGGAGATGGTCATGGAGACAACATGGATAATGCTCAACTGCTTCATCCCCAAAAGCCCAAAACCCATGAGTGCTCCATTTGTGGGTTGGAATTTGCAATAGGGCAAGCCTTAGGTGGCCACATGAGGAGGCATAGAGCTGCAAATTTGAATGGAAGCTTGAAAAATAATTCTACTACTATGAGTAATAGTAGTGGTAATAGCAGCCTTGATTCTTCACCAAAAAAGGGTATGCAACAACAAGCTGCATCTAACAAGAGAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGTTTTTGAAGATCGGAAAGGCAACTGCGTTGGTTGATTATTTGTGA 558 0.4211 MKREREVDHMIMANCLMLLSRGGEFETTYTSFSNNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMVEGDGHGDNMDNAQLLHPQKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGSLKNNSTTMSNSSGNSSLDSSPKKGMQQQAASNKRVLVLDLNLTPFENDLEFLKIGKATALVDYL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0424 185 Gene3D Classic Zinc Finger 37 113 - -
Dod01g0424 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Dod01g0424 185 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Dod01g0424 185 SUPERFAMILY beta-beta-alpha zinc fingers 37 113 IPR036236 -
Dod01g0424 185 Pfam C2H2-type zinc finger 38 64 - -
Dod01g0424 185 Pfam C2H2-type zinc finger 91 115 - -
Dod01g0424 185 PANTHER ZINC FINGER PROTEIN ZAT12 11 172 - -
Dod01g0424 185 SMART c2h2final6 91 113 IPR013087 -
Dod01g0424 185 SMART c2h2final6 39 61 IPR013087 -
Dod01g0424 185 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Dod01g0424 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Dod01g0424 185 PANTHER ZINC FINGER PROTEIN ZAT5 11 172 - -
Dod01g0424 185 MobiDBLite consensus disorder prediction 119 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0424 Dod-Chr1 7434176 7435207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0424 1 173 C2H2 Transcription Factor Family AT2G37430 42.857 4.24e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g0424 zf-C2H2_6 9.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0424 - - gmx:100781134 260.766