Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0412 ATGGCTCCTGCAAAGGTGGACAATGCCAAAAAGGCTGATCCCAAAACTCAGGCTTTGAAGACAGCCAAGGCTGTGAAATCAGGTGGTGTGTTAAAAAAGAAAGCTAAGAAGATCAGGACCAAAGTCACATTTCATCGGCCAAAGACATTGACGAAGGAGAGGAACCCTAAGTACCCTCGCATTAGTGCAACACCAAGAAACAAGTTGGACCATTATCAGATTCTTAAATTTCCTCTCACCACTGAATCTGCAATGAAGAAGATTGAGGATAACAACACACTGGTGTTCATTGTTGACATCCGTGCTGACAAGAAGAAGATTAAAGATGCTGTGAAGAAAATGTACGACATTCAGGCCAAGAAAGTGAATACTTTGATCAGGCCGGATGGAACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGCCTTGGATGTAGCCAACAAAATTGGCATAATCTAA 465 0.4194 MAPAKVDNAKKADPKTQALKTAKAVKSGGVLKKKAKKIRTKVTFHRPKTLTKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0412 154 TIGRFAM uL23_arch: ribosomal protein uL23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
Dod01g0412 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Dod01g0412 154 MobiDBLite consensus disorder prediction 1 25 - -
Dod01g0412 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Dod01g0412 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Dod01g0412 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 -
Dod01g0412 154 Pfam Ribosomal protein L23, N-terminal domain 15 63 IPR005633 -
Dod01g0412 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Dod01g0412 154 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 154 - -
Dod01g0412 154 Gene3D - 35 154 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0412 Dod-Chr1 7108043 7110293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0412 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 89.610 1.81e-72 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0412 K02893 - gmx:100777933 267.7