Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0378 ATGGCTTTAGTCTTGACACTTCATTCTAGCATACCATCATTGGACACATGTTCTTTCTGTGTAGGTGTCATGTTTAATGTGTTGAAAACTGTTGTCTCTTGGTTGAAGGGGTTTTATGATATTGTGCTGAACAGTGTACTTGAAGTTACTAACTGCTTCCCCTTTCCGATAAGGGAGGAGGATGAGGAAATTGAAGCTGACGGTGCAAACTACCAGCTCGAAATGATGAGGTGCTTGAGGGATGTTAATGTTGACAATAATACTGTTGGATGGTATTCTACATTGCTTGGCTCCTTTCAGACTGTGGAATTGATTGAAACCTTCATGAATTACCAGATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACGAAGCTGGAACCTGATACTTCAGTTACCCAGTGTGATTATGATCGTCTGCAATTGTCAACCAGTTCATTAATGGAGAGGAATATGGAATTTTTGATTGAATGCATGGATGACTTGTCAATGGAACAGCAAAAGTTCCAACTCCACTATCGTAGCTTGTCCCATGGGCAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGAAGGTGTTTTGGCAACAAGGGATTGTGA 603 0.4113 MALVLTLHSSIPSLDTCSFCVGVMFNVLKTVVSWLKGFYDIVLNSVLEVTNCFPFPIREEDEEIEADGANYQLEMMRCLRDVNVDNNTVGWYSTLLGSFQTVELIETFMNYQIKVSNSALISAFMTKLEPDTSVTQCDYDRLQLSTSSLMERNMEFLIECMDDLSMEQQKFQLHYRSLSHGQAQQQAWLQKRRCFGNKGL* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0378 200 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 46 97 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dod01g0378 200 CDD MPN_eIF3h 41 193 IPR027524 GO:0003743|GO:0005737|GO:0005852
Dod01g0378 200 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 113 194 - -
Dod01g0378 200 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 42 112 - -
Dod01g0378 200 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 42 112 - -
Dod01g0378 200 Gene3D Cytidine Deaminase, domain 2 9 191 - -
Dod01g0378 200 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 113 194 - -
Dod01g0378 200 Pfam C-terminal region of eIF3h 107 193 IPR045810 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0378 Dod-Chr1 6548646 6553197 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0378 75 193 Eukaryotic Initiation Factors Gene Family AT1G10840 46.961 2.22e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0378 K03247 - cit:102615701 214.542