Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0357 ATGATGAGATTTCCTTCTGGAGGAAGTGAAGGACTTGGGGAGGCATACGATGGAGACATTGCATATGCAAGTGCCCTTGAAACTTTTGGTGGTGGGCATAATGACCCTATCAGTGTAGCTTTTGGAGCATTAAGAGAAATCGGGACGTATAAAGAAGTCCTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTGCAAGAGGTCAAGGAAGCACGGAAGCGCTTTGACAAGGCTAGCCTTATTTATGACCAGACTCGTGAAAGGTTTCTGTCACTAAGAAAAGGCACAAAAAGTGATGTAGCAAATGCCCTAGAAGAGGAGCTTCATATTGCAAGAAATACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCCAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACAATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAGTTGTTGCACCAGATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAGGCAGCTCTCAACGAAAGAATGCAAGAGTACAAACGGCAGATTGACCGAGAGAGTAGGTGGGCTTCAAATGGTTCTAATGGTTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCCAAGGGAAAGGTCCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCATCAAACTTAAGGGGGGATTGGAAAAGGAGGTTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAACAGTTGAGCAAGTCATCAGGATCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCGTCATACTGTGAACCTGCTTACATCAACAATCAAAGTTGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCATTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCTTCATTGCTGAGTTCTCAGATACCTGAAAGGTTGTTGCCTGCAAGTCCAATGGGAAGTGGTCATAATAGGTCTACAAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTCGATCATGCTGCTATTGAAGAAGTGGAGAGAAATCTTGCCACTGCACATCTGGAGCGCCCCTCAAGAAGTTTGCAGCAGCAGCGATCCTGTACTAAAAGTGAGAAGCCAATTGATGTGTTGCGAAAAGTGTGTGGAAATGATAGGTGTGCTGATTGTGGCGCCCCTGAACCTGATTGGGCATCATTAAATCTGGGTGTTCTTGTCTGCATTGAGTGTTCCGGTGTTCATCGAAACCTTGGTGTACACATATCAAAGGTCAGGTCACTTACATTGGATGTTAAAGTGTGGGAACCCTCTGTGATAAGTTTGTTTCAGTCTCTGGGGAATACTTTTGCCAACTCTGTCTGGGAGGAACTACTGCAATCGAGGAGTGCCTTTCAGGTTGACCTTGTCCCTACAGGGTTAAATAGGGCCGATAAATCAATGGCATTTTTCATCAGCAAACCTTGTCAATCTGATTCTCTATCTGTTAAGGAAAAGTTCATCAACACAAAGTATGCGGAGAAGCTTTTTGTTCGCAGGCCAAGGGACAACCAATATCAACTCTTGGTGGCACAACAGATCTGGGAGGCCGTTCGCACTAATGACAAAAAAGCTGTGTACCGATACATTGTCAATTCTGACATTGATGTCAATGCTGTTTATGAGCAAATGTGCAGCAGCTCTTTAACCCTTGCTAAAGTAATGCTATTACAAGAGCAGACAAACCATGATCATGGCTCTATATCAGGGAACACATTGGACTGGTCATCCACTAGCTCTTTGAACTTGGTAGGTACTAAGGAAGGACATGCCATGGACAGTATAGATGGGTCCACCCTACTTCACCTTGCTTGCGAAACTGCAGATATTGGCATGCTGGAGCTTCTCCTACAGTATGGTGCAAATGTACATGCAACTGATTCAAGAGGTCAAACACCACTACATCGCTGTATTCTCAAAGGACGATCTGCATTTGCAAAATTACTGCTTTCGAGGGGAGCTGATCCTCAAGCTGTAGATGATGAGGGAAGAACCCCTATTGAGCTTGCTGCAGAGTCAAATGCTGATGACAGGCAAGTCCATGCTCCATCCACTGACTCTAATGGATGA 2361 0.435 MMRFPSGGSEGLGEAYDGDIAYASALETFGGGHNDPISVAFGALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKSDVANALEEELHIARNTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQLSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSGHNRSTSESSSFESSDFDHAAIEEVERNLATAHLERPSRSLQQQRSCTKSEKPIDVLRKVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVPTGLNRADKSMAFFISKPCQSDSLSVKEKFINTKYAEKLFVRRPRDNQYQLLVAQQIWEAVRTNDKKAVYRYIVNSDIDVNAVYEQMCSSSLTLAKVMLLQEQTNHDHGSISGNTLDWSSTSSLNLVGTKEGHAMDSIDGSTLLHLACETADIGMLELLLQYGANVHATDSRGQTPLHRCILKGRSAFAKLLLSRGADPQAVDDEGRTPIELAAESNADDRQVHAPSTDSNG* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0357 786 PRINTS HIV Rev interacting protein signature 469 488 IPR001164 GO:0005096
Dod01g0357 786 PRINTS HIV Rev interacting protein signature 511 532 IPR001164 GO:0005096
Dod01g0357 786 PRINTS HIV Rev interacting protein signature 488 505 IPR001164 GO:0005096
Dod01g0357 786 ProSiteProfiles Ankyrin repeat region circular profile. 693 724 - -
Dod01g0357 786 Coils Coil 186 206 - -
Dod01g0357 786 Gene3D - 602 775 IPR036770 -
Dod01g0357 786 SUPERFAMILY PH domain-like 252 403 - -
Dod01g0357 786 Pfam BAR domain of APPL family 43 191 - -
Dod01g0357 786 SMART ANK_2a 693 722 IPR002110 GO:0005515
Dod01g0357 786 SMART ANK_2a 726 755 IPR002110 GO:0005515
Dod01g0357 786 CDD ArfGap 460 589 - -
Dod01g0357 786 ProSiteProfiles PH domain profile. 251 387 IPR001849 -
Dod01g0357 786 SUPERFAMILY Ankyrin repeat 614 772 IPR036770 -
Dod01g0357 786 Gene3D Arf GTPase activating protein 438 601 IPR038508 -
Dod01g0357 786 Pfam PH domain 253 386 IPR001849 -
Dod01g0357 786 MobiDBLite consensus disorder prediction 405 420 - -
Dod01g0357 786 MobiDBLite consensus disorder prediction 212 228 - -
Dod01g0357 786 ProSiteProfiles Ankyrin repeat region circular profile. 726 758 - -
Dod01g0357 786 SMART arf_gap_3 457 600 IPR001164 GO:0005096
Dod01g0357 786 MobiDBLite consensus disorder prediction 399 420 - -
Dod01g0357 786 Pfam Putative GTPase activating protein for Arf 460 596 IPR001164 GO:0005096
Dod01g0357 786 PANTHER CENTAURIN/ARF 9 779 IPR045258 GO:0005096
Dod01g0357 786 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 9 779 - -
Dod01g0357 786 ProSiteProfiles Ankyrin repeat profile. 693 725 IPR002110 GO:0005515
Dod01g0357 786 SUPERFAMILY ArfGap/RecO-like zinc finger 457 597 IPR037278 -
Dod01g0357 786 MobiDBLite consensus disorder prediction 207 229 - -
Dod01g0357 786 Coils Coil 110 130 - -
Dod01g0357 786 ProSiteProfiles Ankyrin repeat profile. 726 758 IPR002110 GO:0005515
Dod01g0357 786 ProSiteProfiles ARF GTPase-activating proteins domain profile. 457 602 IPR001164 GO:0005096
Dod01g0357 786 MobiDBLite consensus disorder prediction 752 786 - -
Dod01g0357 786 Gene3D Arfaptin homology (AH) domain/BAR domain 7 210 IPR027267 -
Dod01g0357 786 CDD PH_ACAP 254 391 - -
Dod01g0357 786 Pfam Ankyrin repeats (many copies) 695 747 IPR002110 GO:0005515
Dod01g0357 786 SMART PH_update 252 389 IPR001849 -
Dod01g0357 786 Gene3D - 244 396 IPR011993 -
Dod01g0357 786 CDD BAR_SFC_plant 10 174 IPR035670 -
Dod01g0357 786 SUPERFAMILY BAR/IMD domain-like 15 274 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0357 Dod-Chr1 6252575 6260264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0357 469 596 C2H2 Transcription Factor Family AT4G21160 41.860 1.95e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0357 K12489 - gmx:100789134 1353.19