Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0355 AACAGTAAAGTTGATGTAATTGCTTCTCAGCATGAAAGTAGCCTCTTCTCGAGTTCTCTGTCAGACATGTTTAGTGGGAAATTGAGACTATCTGCAAATAATTCTCTATATGGACATTCAGCTGATACTGTTTCATCTCAATGTGAGGAAGAGATGATTTTTGAATCTCTTGAAGAACTTGAGGCTCATACTATTGGAAATCTGCTCCCTAATGATGAAGATGATCTGCTTGCTGGACTGACCGATGGGCTTGACCACATCATCCAAGACAGTTCCCATGATGACTTGGATGAACTAGAGATTTTTGCTAGCGTTGGAGGAATGGATTTGGGAGATGATGATAATTCATCTTCTGGACCAAAGAATTCTGAATTCCCTGATGGAACTTGTAATGATCAACTAGAGCTTTGCAATGCCTCAATTGCAGGAGAACACCCCTCTAGAACATTACTTGTGAAAAATATTTCCAGTGATGTTGAAGATTCTGAATTGAAATCTCTATTTGAGCAATTTGGAGATATTCGCACTCTTTACAAAGCCTGCAAGCAATGCGGATTTGTGATGATCTCATATTATGATATCCGAGCTGCCCAAAATGCAATGCGAGCTCACCAGAATGGACTCTTCAGCTTCAGGAAGTTTGACATTCATTATCTGATTCCAAAGGATAACCCTTCCAAGAAAGATATTAATCAGGCCACTCTTGCAGTCTTTTTATATGATTCATCTGTTTCAAATGATGAACTTCACCGTATATTTAATGCTTATGGAGAAATCAAGGAGATCCGTGGAAACCCACAAAGTCAACATCACAAATTGATTGAATTTTCTGATGTCAGAGCTGCAAAAGCGGCTCTCCACGCATTAAACAGAAATGATACAACAGGGAGGAGGCTAAAAGTGGAGCCAAGCCTACATGGTGACTCTAAAAGTATGTTTCAACATATCCATCCAGAATTAGAACAGAAAGAATATAGCCATTATCTGCACCAGAACAGCCCTCCTCTTGAGTTACCTACTAGCTCCCAAGGCTGGCATGGAGTAACTAAATCTGGTAGCATGGATGGTGAAAGAATTCTGGGAGCTGAGCCTGCTATGCATGCACCATCCCTTGAAACTTCTCTTCTTCATGGGGTCTCCTCAAGTGTTCCTAACACCTTACCATCTCTACTCAGAGTTAAATCAGTCGGCAACCAGTGTGGAATCACTGAATCTAGTTCACCTAAGGAGTTGAATTTTGGTAGTCAATCAGCTTTTGATCCTCATTCTCTTCCAGCATGTCATGATGGTTTAGCTAATGGTGTTCCCTGTAATCCTCCTGAGTTGGCTTCAAAAATCAATCGCATAACACAGGAAAGAATAGATAACATGCAGTTCTGTCAAGTTAACTATAATGGACACTCTATGGAATTCAATGAATACGTTTTTGAATCTTCTGGTGATGGAGGTTGTCCTCTTCCTGGCCATCATTACAAATGGAGCAACTCCCATCAGACTCTTGGAATGAAGTGGCCAAATTCACCACCATATTTTGATGGTGGAATTTGTGCAGCTCCTTCCCTGCCAAGATTGCACGGTTTTCCAAGGCCACCGTCACATATGAGGAACACTGTTTTATCCATAAATTACCATCATGTGCCATCCGCTCCTGCAGTCAACTGTAATATTTGGGATAGACAACATACCTATGCAACCCATTGTGTGGACTTCACTTCTCATAATATCTTTCCCCATTTTGGGAGGAATTATGTTGATCTTCAAGTCCTCCCTAAGAATGTTGGATTCCAATTCCATAACCAAAGGGGTATGATATTTCCTGCAAGAAACCATATGATTCATATGCTTAATTCATTTGGTACTCACAAAGAACGTGCTAGAAGCCGTAGAAATGAAGGTGGGTCAAACTTGGTTGACAAGAAACAATATGAACTTGATATTGATTGCATTAAGAAGGGAGAAGATAACCGAACAACACTTATGATAAAGAACATTCCGAACAAGTATACTTCCAAGATGCTGTTGGCTGCAATTGATGAACGCCATAAAGGCACTTATGATTTTGTTTATTTACCAATTGATTTCAAGAATAAATGCAATGTGGGATATGCATTCATCAACATGACTAATCCCAGCTTGATTATACCACTCTATCAGGCATTCAATGGAAAGAAATGGGAGAAATTCAACAGCGAGAAAGTGGCATCACTAGCATATGCTCGCATACAAGGGAAAGCAGCGCTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCGATGCAGGCCCATCCTCTTTAGTACTGATGGCCCTAATGCTGGTGATCAAGTCCCTTTCCCAGTTGCTGTTAATGTTCGCAACAAACCTGGAAGAGTGAGAAACAACAACACCCTTGAGGATAAATTGGCAGTGAGCCCCTCCAATCCGGGAACTAGCAGGCTCTCACCAGGTGGAGACTGTGTTTCGAAGGAGTCAATTTAA 2487 0.4089 NSKVDVIASQHESSLFSSSLSDMFSGKLRLSANNSLYGHSADTVSSQCEEEMIFESLEELEAHTIGNLLPNDEDDLLAGLTDGLDHIIQDSSHDDLDELEIFASVGGMDLGDDDNSSSGPKNSEFPDGTCNDQLELCNASIAGEHPSRTLLVKNISSDVEDSELKSLFEQFGDIRTLYKACKQCGFVMISYYDIRAAQNAMRAHQNGLFSFRKFDIHYLIPKDNPSKKDINQATLAVFLYDSSVSNDELHRIFNAYGEIKEIRGNPQSQHHKLIEFSDVRAAKAALHALNRNDTTGRRLKVEPSLHGDSKSMFQHIHPELEQKEYSHYLHQNSPPLELPTSSQGWHGVTKSGSMDGERILGAEPAMHAPSLETSLLHGVSSSVPNTLPSLLRVKSVGNQCGITESSSPKELNFGSQSAFDPHSLPACHDGLANGVPCNPPELASKINRITQERIDNMQFCQVNYNGHSMEFNEYVFESSGDGGCPLPGHHYKWSNSHQTLGMKWPNSPPYFDGGICAAPSLPRLHGFPRPPSHMRNTVLSINYHHVPSAPAVNCNIWDRQHTYATHCVDFTSHNIFPHFGRNYVDLQVLPKNVGFQFHNQRGMIFPARNHMIHMLNSFGTHKERARSRRNEGGSNLVDKKQYELDIDCIKKGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFVYLPIDFKNKCNVGYAFINMTNPSLIIPLYQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFSTDGPNAGDQVPFPVAVNVRNKPGRVRNNNTLEDKLAVSPSNPGTSRLSPGGDCVSKESI* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0355 828 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 206 IPR000504 GO:0003723
Dod01g0355 828 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 300 IPR000504 GO:0003723
Dod01g0355 828 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 807 - -
Dod01g0355 828 SUPERFAMILY RNA-binding domain, RBD 658 743 IPR035979 GO:0003676
Dod01g0355 828 MobiDBLite consensus disorder prediction 803 828 - -
Dod01g0355 828 Gene3D - 138 234 IPR012677 -
Dod01g0355 828 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 306 IPR000504 GO:0003723
Dod01g0355 828 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 221 IPR000504 GO:0003723
Dod01g0355 828 PANTHER PROTEIN MEI2-LIKE 4 2 807 - -
Dod01g0355 828 SMART rrm1_1 236 302 IPR000504 GO:0003723
Dod01g0355 828 SMART rrm1_1 149 217 IPR000504 GO:0003723
Dod01g0355 828 SMART rrm1_1 658 734 IPR000504 GO:0003723
Dod01g0355 828 CDD RRM1_MEI2_like 147 223 IPR034453 -
Dod01g0355 828 MobiDBLite consensus disorder prediction 803 817 - -
Dod01g0355 828 SUPERFAMILY RNA-binding domain, RBD 145 307 IPR035979 GO:0003676
Dod01g0355 828 Gene3D - 235 327 IPR012677 -
Dod01g0355 828 Pfam RNA recognition motif 2 656 752 IPR007201 -
Dod01g0355 828 CDD RRM3_MEI2_like 659 744 IPR034454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0355 Dod-Chr1 6206325 6212219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0355 150 310 Eukaryotic Initiation Factors Gene Family AT3G16380 24.118 4.68e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0355 - - zju:107429699 979.933