Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod01g0355 | AACAGTAAAGTTGATGTAATTGCTTCTCAGCATGAAAGTAGCCTCTTCTCGAGTTCTCTGTCAGACATGTTTAGTGGGAAATTGAGACTATCTGCAAATAATTCTCTATATGGACATTCAGCTGATACTGTTTCATCTCAATGTGAGGAAGAGATGATTTTTGAATCTCTTGAAGAACTTGAGGCTCATACTATTGGAAATCTGCTCCCTAATGATGAAGATGATCTGCTTGCTGGACTGACCGATGGGCTTGACCACATCATCCAAGACAGTTCCCATGATGACTTGGATGAACTAGAGATTTTTGCTAGCGTTGGAGGAATGGATTTGGGAGATGATGATAATTCATCTTCTGGACCAAAGAATTCTGAATTCCCTGATGGAACTTGTAATGATCAACTAGAGCTTTGCAATGCCTCAATTGCAGGAGAACACCCCTCTAGAACATTACTTGTGAAAAATATTTCCAGTGATGTTGAAGATTCTGAATTGAAATCTCTATTTGAGCAATTTGGAGATATTCGCACTCTTTACAAAGCCTGCAAGCAATGCGGATTTGTGATGATCTCATATTATGATATCCGAGCTGCCCAAAATGCAATGCGAGCTCACCAGAATGGACTCTTCAGCTTCAGGAAGTTTGACATTCATTATCTGATTCCAAAGGATAACCCTTCCAAGAAAGATATTAATCAGGCCACTCTTGCAGTCTTTTTATATGATTCATCTGTTTCAAATGATGAACTTCACCGTATATTTAATGCTTATGGAGAAATCAAGGAGATCCGTGGAAACCCACAAAGTCAACATCACAAATTGATTGAATTTTCTGATGTCAGAGCTGCAAAAGCGGCTCTCCACGCATTAAACAGAAATGATACAACAGGGAGGAGGCTAAAAGTGGAGCCAAGCCTACATGGTGACTCTAAAAGTATGTTTCAACATATCCATCCAGAATTAGAACAGAAAGAATATAGCCATTATCTGCACCAGAACAGCCCTCCTCTTGAGTTACCTACTAGCTCCCAAGGCTGGCATGGAGTAACTAAATCTGGTAGCATGGATGGTGAAAGAATTCTGGGAGCTGAGCCTGCTATGCATGCACCATCCCTTGAAACTTCTCTTCTTCATGGGGTCTCCTCAAGTGTTCCTAACACCTTACCATCTCTACTCAGAGTTAAATCAGTCGGCAACCAGTGTGGAATCACTGAATCTAGTTCACCTAAGGAGTTGAATTTTGGTAGTCAATCAGCTTTTGATCCTCATTCTCTTCCAGCATGTCATGATGGTTTAGCTAATGGTGTTCCCTGTAATCCTCCTGAGTTGGCTTCAAAAATCAATCGCATAACACAGGAAAGAATAGATAACATGCAGTTCTGTCAAGTTAACTATAATGGACACTCTATGGAATTCAATGAATACGTTTTTGAATCTTCTGGTGATGGAGGTTGTCCTCTTCCTGGCCATCATTACAAATGGAGCAACTCCCATCAGACTCTTGGAATGAAGTGGCCAAATTCACCACCATATTTTGATGGTGGAATTTGTGCAGCTCCTTCCCTGCCAAGATTGCACGGTTTTCCAAGGCCACCGTCACATATGAGGAACACTGTTTTATCCATAAATTACCATCATGTGCCATCCGCTCCTGCAGTCAACTGTAATATTTGGGATAGACAACATACCTATGCAACCCATTGTGTGGACTTCACTTCTCATAATATCTTTCCCCATTTTGGGAGGAATTATGTTGATCTTCAAGTCCTCCCTAAGAATGTTGGATTCCAATTCCATAACCAAAGGGGTATGATATTTCCTGCAAGAAACCATATGATTCATATGCTTAATTCATTTGGTACTCACAAAGAACGTGCTAGAAGCCGTAGAAATGAAGGTGGGTCAAACTTGGTTGACAAGAAACAATATGAACTTGATATTGATTGCATTAAGAAGGGAGAAGATAACCGAACAACACTTATGATAAAGAACATTCCGAACAAGTATACTTCCAAGATGCTGTTGGCTGCAATTGATGAACGCCATAAAGGCACTTATGATTTTGTTTATTTACCAATTGATTTCAAGAATAAATGCAATGTGGGATATGCATTCATCAACATGACTAATCCCAGCTTGATTATACCACTCTATCAGGCATTCAATGGAAAGAAATGGGAGAAATTCAACAGCGAGAAAGTGGCATCACTAGCATATGCTCGCATACAAGGGAAAGCAGCGCTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCGATGCAGGCCCATCCTCTTTAGTACTGATGGCCCTAATGCTGGTGATCAAGTCCCTTTCCCAGTTGCTGTTAATGTTCGCAACAAACCTGGAAGAGTGAGAAACAACAACACCCTTGAGGATAAATTGGCAGTGAGCCCCTCCAATCCGGGAACTAGCAGGCTCTCACCAGGTGGAGACTGTGTTTCGAAGGAGTCAATTTAA | 2487 | 0.4089 | NSKVDVIASQHESSLFSSSLSDMFSGKLRLSANNSLYGHSADTVSSQCEEEMIFESLEELEAHTIGNLLPNDEDDLLAGLTDGLDHIIQDSSHDDLDELEIFASVGGMDLGDDDNSSSGPKNSEFPDGTCNDQLELCNASIAGEHPSRTLLVKNISSDVEDSELKSLFEQFGDIRTLYKACKQCGFVMISYYDIRAAQNAMRAHQNGLFSFRKFDIHYLIPKDNPSKKDINQATLAVFLYDSSVSNDELHRIFNAYGEIKEIRGNPQSQHHKLIEFSDVRAAKAALHALNRNDTTGRRLKVEPSLHGDSKSMFQHIHPELEQKEYSHYLHQNSPPLELPTSSQGWHGVTKSGSMDGERILGAEPAMHAPSLETSLLHGVSSSVPNTLPSLLRVKSVGNQCGITESSSPKELNFGSQSAFDPHSLPACHDGLANGVPCNPPELASKINRITQERIDNMQFCQVNYNGHSMEFNEYVFESSGDGGCPLPGHHYKWSNSHQTLGMKWPNSPPYFDGGICAAPSLPRLHGFPRPPSHMRNTVLSINYHHVPSAPAVNCNIWDRQHTYATHCVDFTSHNIFPHFGRNYVDLQVLPKNVGFQFHNQRGMIFPARNHMIHMLNSFGTHKERARSRRNEGGSNLVDKKQYELDIDCIKKGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFVYLPIDFKNKCNVGYAFINMTNPSLIIPLYQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFSTDGPNAGDQVPFPVAVNVRNKPGRVRNNNTLEDKLAVSPSNPGTSRLSPGGDCVSKESI* | 829 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod01g0355 | 828 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 150 | 206 | IPR000504 | GO:0003723 | |
Dod01g0355 | 828 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 242 | 300 | IPR000504 | GO:0003723 | |
Dod01g0355 | 828 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 2 | 807 | - | - | |
Dod01g0355 | 828 | SUPERFAMILY | RNA-binding domain, RBD | 658 | 743 | IPR035979 | GO:0003676 | |
Dod01g0355 | 828 | MobiDBLite | consensus disorder prediction | 803 | 828 | - | - | |
Dod01g0355 | 828 | Gene3D | - | 138 | 234 | IPR012677 | - | |
Dod01g0355 | 828 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 233 | 306 | IPR000504 | GO:0003723 | |
Dod01g0355 | 828 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 148 | 221 | IPR000504 | GO:0003723 | |
Dod01g0355 | 828 | PANTHER | PROTEIN MEI2-LIKE 4 | 2 | 807 | - | - | |
Dod01g0355 | 828 | SMART | rrm1_1 | 236 | 302 | IPR000504 | GO:0003723 | |
Dod01g0355 | 828 | SMART | rrm1_1 | 149 | 217 | IPR000504 | GO:0003723 | |
Dod01g0355 | 828 | SMART | rrm1_1 | 658 | 734 | IPR000504 | GO:0003723 | |
Dod01g0355 | 828 | CDD | RRM1_MEI2_like | 147 | 223 | IPR034453 | - | |
Dod01g0355 | 828 | MobiDBLite | consensus disorder prediction | 803 | 817 | - | - | |
Dod01g0355 | 828 | SUPERFAMILY | RNA-binding domain, RBD | 145 | 307 | IPR035979 | GO:0003676 | |
Dod01g0355 | 828 | Gene3D | - | 235 | 327 | IPR012677 | - | |
Dod01g0355 | 828 | Pfam | RNA recognition motif 2 | 656 | 752 | IPR007201 | - | |
Dod01g0355 | 828 | CDD | RRM3_MEI2_like | 659 | 744 | IPR034454 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod01g0355 | Dod-Chr1 | 6206325 | 6212219 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod01g0355 | 150 | 310 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 24.118 | 4.68e-06 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod01g0355 | - | - | zju:107429699 | 979.933 |