Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0354 ATGGATCCAAGAAGGCATGGAAAGCTGCCATTATCTTCACAAGCATCAGAGGGCAGAGAGAGAAATGATGCACCAGATCATGAGGCTGATACTTATGCATCTTCCTGGTGCTCAGATACTGACATGTCTGCCATGGTTTCTGCTCTTGCTCAAGTTATGGGAACTACCAATCAGAACCCAAACATGGCACAACCAGCCCCTTTTCCTAGCTCAACTTCTATGGTCAAGGAGGAACACATACACCCACCTCAGCCTCTTCAAGATCAAGGGAGCACAAAGAAACCACACTACAGAGGGGTAAGACAGAGGCCTTGGGGCAAATGGGCAGCAGAAATCCGTGATCCAAAGAAAGCAGCCAGAGTGTGGCTGGGAACCTTTGAAACAGCAGAGGATGCAGCCTTGGCATATGACAAAGCTGCACTCAAGTTCAAAGGCACAAAAGCCAAACTCAATTTCCCTGAAAGAGTTGTTCAAGGGAACAACAACAGCACTGATTTTGCCTACATGCTACAAGGACTCTACAGTGCTACAACTCCAACATCATCATTGTCATCACATGAACATGATCATCAGGTTTTTCCAAACCTATTTCAATATGCACAGATTCTTTCCAGTGATGATGCTCAGTTCCCATATTACACATCACATCTCTTCAATCAACAACCTGCATTCAGTTCAGAATTTTGTAGTACCACTTTGTCTTCGTCCTCCTCATGTCCCTCATCTTACTTCTACAACCAACAGCAACATGATGATGAAGAAGAACATCACCACCACCACCACCACCACCACCCAGATCAGTAG 804 0.454 MDPRRHGKLPLSSQASEGRERNDAPDHEADTYASSWCSDTDMSAMVSALAQVMGTTNQNPNMAQPAPFPSSTSMVKEEHIHPPQPLQDQGSTKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERVVQGNNNSTDFAYMLQGLYSATTPTSSLSSHEHDHQVFPNLFQYAQILSSDDAQFPYYTSHLFNQQPAFSSEFCSTTLSSSSSCPSSYFYNQQQHDDEEEHHHHHHHHHPDQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0354 267 MobiDBLite consensus disorder prediction 1 35 - -
Dod01g0354 267 PANTHER DNA-BINDING DOMAIN 12 256 IPR044808 GO:0003700|GO:0009873
Dod01g0354 267 CDD AP2 95 154 IPR001471 GO:0003700|GO:0006355
Dod01g0354 267 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
Dod01g0354 267 MobiDBLite consensus disorder prediction 56 71 - -
Dod01g0354 267 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Dod01g0354 267 SUPERFAMILY DNA-binding domain 96 154 IPR016177 GO:0003677
Dod01g0354 267 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
Dod01g0354 267 MobiDBLite consensus disorder prediction 248 267 - -
Dod01g0354 267 Gene3D AP2/ERF domain 96 155 IPR036955 GO:0003700|GO:0006355
Dod01g0354 267 MobiDBLite consensus disorder prediction 56 101 - -
Dod01g0354 267 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 256 - -
Dod01g0354 267 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Dod01g0354 267 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0354 Dod-Chr1 6195420 6199080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0354 45 218 AP2-EREBP Transcription Factor Family AT5G13330 50.276 1.43e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g0354 AP2 6.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0354 - - gmx:100796624 283.493