Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0353 ATGCAGAAGAAGACCCACGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGCGGCAAGTACACCCTCGGTTACAAAACCGTTCTCAAATCCCTCAGGAGCTCCAAAGGGAAATTGATTATCATTGCCAACAACTGCCCACCTTTGAGGAAGTCAGAGATTGAATACTATGCCATGTTGGCAAAGGTTGGAGTTCACCATTATAATGGGAATAATGTTGATTTGGGAACTGCATGCGGCAAATATTTCAGAGTGTGCTGCCTCAGCATTATTGATCCTGGTGATTCTGACATCATTAAGACACTGCCTGGCGAACAGTAA 324 0.4506 MQKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTLPGEQ* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0353 107 PANTHER 60S RIBOSOMAL PROTEIN L30 2 107 - -
Dod01g0353 107 ProSitePatterns Ribosomal protein L30e signature 2. 75 95 IPR022991 -
Dod01g0353 107 Gene3D - 1 103 IPR029064 -
Dod01g0353 107 ProSitePatterns Ribosomal protein L30e signature 1. 19 43 IPR022991 -
Dod01g0353 107 Hamap 50S ribosomal protein L30e [rpl30e]. 7 104 IPR000231 GO:0003723|GO:0003735|GO:0022625
Dod01g0353 107 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 8 100 IPR004038 -
Dod01g0353 107 SUPERFAMILY L30e-like 8 101 IPR029064 -
Dod01g0353 107 PANTHER RIBOSOMAL PROTEIN L30 2 107 IPR039109 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0353 Dod-Chr1 6189695 6191503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0353 3 107 Cytoplasmic Ribosomal Protein Gene Family AT3G18740 88.571 2.82e-68 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0353 K02908 - gmx:100806260 216.083