Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0344 ATGTTCCCTTCTAGTTACAGCAGTTACAGCTCCTCAGGCCCTTACCCTTGCTACCCTTCATCTTCTTCTTCTTCATCATTCCCTCCTTTCACTTTCCTTAACCCTGAAAACAATGCTCCTTCAAACAACAACACCACCTTTCTGATTCATGACCCACTTCCTGTTCCTTACAACATACCCTCTCAACATGCTCCAAATATCCCAGAATCACTGACTAATTTGGCAGTTACAGACTGTGCTGCTGCAGCTGCAATGTTCAAGCAAGAGGTGATGAGTGGTGGTGGTGCTCATCATTATGGCATCTCCAACTTGCTCACAAAGAAGCCAGCCAAGAAGGACAGGCACAGCAAGATTCACACATCGCAGGGCCTGAGGGACCGCAGGGTGAGGCTCTCCATTGAGATTGCACGCAAGTTCTTTGACCTTCAAGACATGCTGGGGTTTGACAAGGCCAGCAACACCCTCGAGTGGCTCCTCACAAAGTCAAAGAGAGCAATTAAAGAGCTTGCTAGGAGCAAGAACTGTAGCAGTGCTGCTAATAGCTTCTCTTCCTCTTCTGAGGGTGAAGTCGATTCAGTGATCAACCAAGTCATTGATGGCACTGGAGACCTGCAACAAGGGTTTGTGGACTCGGAAGAGAGGAGGTTGAGAAGGGCACAGAAGGAAGAATCAAGGGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGGGAGAGGACTAGCAACAAGATGTGCAACAACAACAACAATAACACCAGCAGTGAGAAGGTGCAAGACTTGAAGAAAAAGTGCCCTGCAATGGAAGATCTTCAATTCCTTCACCAATTGAGGTCAACCATTCAACCCCATGAGGAACCTGTTCAACCTCACCCTCATCCTCACCTAGTGGGAAGTGATGTCCCCAGAGATGACTTCAATGTTATTGAGGAATCCATTGTCATCAAGAGAAAGTTGAAGCAGTCATTGATGTCTTCTTCTCATCACCAAAACCATGTCATGCCTAAGGAAGCAAGCTTCAACAACAGTGGCTACCACTCCTACCCCAATGTGTCACCAAATTGGGAACCTAATAATGGTGCCACTGGCCGCTCCAGCTTTTGTACAATAGCCAGCATGAATCTATCTACAAGGCTTCAGATCTTTGAAAAGTCTAGGGAAGAGTGCACCACTCCCCGTCTATAA 1191 0.4694 MFPSSYSSYSSSGPYPCYPSSSSSSSFPPFTFLNPENNAPSNNNTTFLIHDPLPVPYNIPSQHAPNIPESLTNLAVTDCAAAAAMFKQEVMSGGGAHHYGISNLLTKKPAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLLTKSKRAIKELARSKNCSSAANSFSSSSEGEVDSVINQVIDGTGDLQQGFVDSEERRLRRAQKEESRAKMKESREKARARARERTSNKMCNNNNNNTSSEKVQDLKKKCPAMEDLQFLHQLRSTIQPHEEPVQPHPHPHLVGSDVPRDDFNVIEESIVIKRKLKQSLMSSSHHQNHVMPKEASFNNSGYHSYPNVSPNWEPNNGATGRSSFCTIASMNLSTRLQIFEKSREECTTPRL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0344 396 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 395 IPR005333 GO:0003700
Dod01g0344 396 ProSiteProfiles TCP domain profile. 111 169 IPR017887 -
Dod01g0344 396 MobiDBLite consensus disorder prediction 244 258 - -
Dod01g0344 396 MobiDBLite consensus disorder prediction 209 243 - -
Dod01g0344 396 MobiDBLite consensus disorder prediction 209 259 - -
Dod01g0344 396 Pfam TCP family transcription factor 110 249 IPR017887 -
Dod01g0344 396 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 9 395 - -
Dod01g0344 396 ProSiteProfiles R domain profile. 229 246 IPR017888 -
Dod01g0344 396 Coils Coil 209 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0344 Dod-Chr1 6028280 6029603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0344 107 251 TCP Transcription Factor Family AT1G67260 48.428 1.59e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Dod01g0344 TCP 9.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0344 - - gmx:100786452 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0344 01 6028280 6029603 Dod01g0344 01 6028280 6029603 ECH