Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0308 ATGTTGGAGGCAGACACCAACACCACGGGCTGGGCAGCGCGCGTGTGCGGCACGTGCCGCTCAGCCGCTAGCTCGGTGTTCTGCCGAGCAGACTGCGCGTACCTCTGCACGAACTGTGACGCGCGCATCCACGCGGCGAACCGCATGGCGTCGCGTCACGAGCGCGTGTGGGTCTGCGAGGCATGCGAACGCGCCCCGGCGGCGTTCCTCTGCAAGGCGGACGCGGCCTCCCTGTGCTCCACCTGCGACGCGGACATCCACTCAGCCAACCCGCTCGCCAGCCGCCACCAGAGGGTGCCCATTGGGCCCCTCTACAGCCCACCACCGCAGACCCAATTGGGCCTACAAAACAACGGGCTCGCGGGCTGTGAGGTTGAGATGATGGAGAACGACGAAGACGAGGACAATGATGAGGACGAGGCTGCTTCTTGGTTGTTACTGAATCCGTTCAAGAGCAATAATAACGGAAATAACAACCTTAACTTAAATAGCAGCCAGAATCAGCAGGGTGGCAATAACGGTTTTCTGTTTGGTGGGGAGGTTGATGAGTATTTGGACCTTGTGGATTGTAGTAACTCTTGTGGTGGTGGTGGTGGTGATCATGAAAACAATAGCAACAGCAATAACAATAACCAGTTTGTTGATGGTGGTGATCATTATCGTCATCATCAGCAATATGGTGGTGGTGGTGGTGGTGGTGTTGTTGGGGATAGTGTTGTTCCAGTTCAGCAGGGGCAGCATTTTCAGCTTGGGTTGGAGTTTGAGCCCTCCAAAGCTGGCTTCAGTTACAGTTCTTCAATTAGTCAAAGTGTTTCGGTTTCATCAATGGATGTTGGTATTGTGCCAGAATCACCAATAAGTAATGTCTCAATTTCCCATTCAAGACCCCCCAAAGGGACAATTGATCTATTTTCAGGACCCCCAATTCAGATGGCTTCCCATCTGGCTCCAATGGACAGAGAAGCAAGAGTGCTAAGGTATAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATCAGGTATGCATCAAGGAAGGCCTACGCAGAGACTAGACCCCGCATAAAAGGTAGATTTGCCAAGAGAACAGATGTAGAAGTTGAAGTGGACCAGATGTTCTCCCCAACACTAATTACAGAAGTAGGGTATGGCATTGTACCCTCATTCTGA 1170 0.5188 MLEADTNTTGWAARVCGTCRSAASSVFCRADCAYLCTNCDARIHAANRMASRHERVWVCEACERAPAAFLCKADAASLCSTCDADIHSANPLASRHQRVPIGPLYSPPPQTQLGLQNNGLAGCEVEMMENDEDEDNDEDEAASWLLLNPFKSNNNGNNNLNLNSSQNQQGGNNGFLFGGEVDEYLDLVDCSNSCGGGGGDHENNSNSNNNNQFVDGGDHYRHHQQYGGGGGGGVVGDSVVPVQQGQHFQLGLEFEPSKAGFSYSSSISQSVSVSSMDVGIVPESPISNVSISHSRPPKGTIDLFSGPPIQMASHLAPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEVEVDQMFSPTLITEVGYGIVPSF* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0308 389 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 12 389 - -
Dod01g0308 389 SMART bboxneu5 11 58 IPR000315 GO:0008270
Dod01g0308 389 SMART bboxneu5 59 101 IPR000315 GO:0008270
Dod01g0308 389 MobiDBLite consensus disorder prediction 199 215 - -
Dod01g0308 389 ProSiteProfiles Zinc finger B-box type profile. 11 58 IPR000315 GO:0008270
Dod01g0308 389 MobiDBLite consensus disorder prediction 199 227 - -
Dod01g0308 389 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Dod01g0308 389 CDD Bbox1_BBX-like 15 58 - -
Dod01g0308 389 Pfam CCT motif 320 362 IPR010402 GO:0005515
Dod01g0308 389 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 12 389 IPR045281 GO:0009909
Dod01g0308 389 Pfam B-box zinc finger 56 101 IPR000315 GO:0008270
Dod01g0308 389 CDD Bbox1_BBX-like 58 101 - -
Dod01g0308 389 ProSiteProfiles CCT domain profile. 320 362 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0308 Dod-Chr1 5480215 5482743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0308 1 389 C2C2-CO-like Transcription Factor Family AT3G02380 54.156 5.44e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dod01g0308 zf-B_box 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0308 - - ahf:112744683 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2329 02 51243032 51245625 Dod01g0308 01 5480215 5482743 PCT