Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0268 ATGGGAAGGGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAGACCAGCCAGCAAGTGACGTTTTCCAAGAGAAGAACAGGACTTCTCAAGAAAGCAAACGAAATCTCTGTGCTGTGTGATGCTCAGGTAGCGCTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCATCTGAATCAAGCATGGAAGGCATCCTAGAACGTTATGAGAGGCATGCCCATGCAGAACATGCTAGAGCTAACAATGAACCAGAGGGAAACTGGTCTTACGAATTCATCAAGCTCACTTCTAAAGTTGAAGTTCTAGAGAAGAACATAAGGAATTTTGTGGGAAATGATCTGGACCCCTTGAGTTTGAGAGAGCTTCAGACTTTGGAGCAGCAGCTTGACACAGCTATAAGGCGTATCCGAATAAGAAAGGTGAACAATGCTTATCAATTGAACCAAGTTATGAATCAGTCCATCTCAGAGATGCATAAAAAGGCAAGGGCATTGCAGGAGCAAAACAATATGCTAGCAAAGAAGATGAAGGAGAAAGAAAAGACCCTGGGGCCAATGTTCATCTGCCTTCAACTTAGAGCTACCTCCCCAGAGAGTTCCTTGTCTAAATCTCAGTGGGACACTACAAGCAAGAGAATCGCTGGATGA 651 0.4393 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSESSMEGILERYERHAHAEHARANNEPEGNWSYEFIKLTSKVEVLEKNIRNFVGNDLDPLSLRELQTLEQQLDTAIRRIRIRKVNNAYQLNQVMNQSISEMHKKARALQEQNNMLAKKMKEKEKTLGPMFICLQLRATSPESSLSKSQWDTTSKRIAG* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0268 216 ProSiteProfiles K-box domain profile. 86 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod01g0268 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod01g0268 216 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Dod01g0268 216 PANTHER MADS BOX PROTEIN 1 189 - -
Dod01g0268 216 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Dod01g0268 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod01g0268 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod01g0268 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod01g0268 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod01g0268 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod01g0268 216 Coils Coil 149 183 - -
Dod01g0268 216 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Dod01g0268 216 Pfam K-box region 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod01g0268 216 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0268 Dod-Chr1 5046808 5057016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0268 1 184 MADS-box Gene Family AT1G26310 56.915 1.96e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod01g0268 K-box 5.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0268 K09264 - gmx:100786580 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0268 01 5046808 5057016 Dod05g1816 05 43677452 43685362 ECH
Dod01g0268 01 5046808 5057016 Dod01g0268 01 5046808 5057016 ECH
Dod01g0268 01 5046808 5057016 Dod02g2368 02 51973308 52002940 PCT