Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0266 ATGGTAGCTATGATGGGTTTTCTAGCAGCTGAGAAAGGGTGGAGGAAAGGGCCTTGGACTCATGAAGAGGACAAGCTGCTCAGTGAATATGTCAGCTTGCATGGGGAGGGTAGGTGGAGTTGTGTGTCGAAGTTTACAGGCTTAAACAGGAGTGGCAAAAGTTGCAGGTTGAGATGGGTGAACTATTTGAGGTCTGGCCTCAAGAAAGGCCAGCTAACACCTCTGGAAGAAGGAATAATTATTGAACTGCATGCTGTTTTCGGTAACAAGTGGTCTACAATAGCAAAGTACTTGCCAGGTAGAACTGATAACGAGATTAAGAACTACTGGAGAACACACTTCAAGAAGAAGGAGAAATCCAATAATCACAATAATAAGAAACTAGAAAGGAAGAGAGCAAAGATGTTGAAAATGAAACTATTGAAACAAGAGCAACAAGTTGAGGAGCAGCCTAAGGAATGCTACATCAAAAGCATCTCCTCTCAAGAGGAGACCAACAACAATGAAATAAAATCCTGTGAGACAAAGGAAAACCATGATCAACATGATCATATGGGTTTCATGCACCCAAGATTGGAGCACCAATATAGCCTCCCTTTGATGCACCAAGAATATTTCTCATCTAATCCATGGCCAGATATTACAGCAGATGATGCCTTGTGGTTTAGTTTATGGGACTTTGATGTGCCACACGGTTTTGAGGAGCATGTTAGCGAGCTCAGCAAATATGCCATGCCAAACCAAGCTACCAGCTTTGGAGATGGAGAGGTTCCCATGCAAGACTTGTCGTGGAGAGATCTTTACATGGATACAAATTTAACACCTCATGTTTAG 834 0.4257 MVAMMGFLAAEKGWRKGPWTHEEDKLLSEYVSLHGEGRWSCVSKFTGLNRSGKSCRLRWVNYLRSGLKKGQLTPLEEGIIIELHAVFGNKWSTIAKYLPGRTDNEIKNYWRTHFKKKEKSNNHNNKKLERKRAKMLKMKLLKQEQQVEEQPKECYIKSISSQEETNNNEIKSCETKENHDQHDHMGFMHPRLEHQYSLPLMHQEYFSSNPWPDITADDALWFSLWDFDVPHGFEEHVSELSKYAMPNQATSFGDGEVPMQDLSWRDLYMDTNLTPHV* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0266 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Dod01g0266 277 SMART sant 68 116 IPR001005 -
Dod01g0266 277 SMART sant 15 65 IPR001005 -
Dod01g0266 277 CDD SANT 73 114 IPR001005 -
Dod01g0266 277 Gene3D - 16 68 - -
Dod01g0266 277 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Dod01g0266 277 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Dod01g0266 277 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 242 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dod01g0266 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Dod01g0266 277 CDD SANT 18 63 IPR001005 -
Dod01g0266 277 Gene3D - 71 185 - -
Dod01g0266 277 PANTHER MYB TRANSCRIPTION FACTOR 3 242 - -
Dod01g0266 277 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Dod01g0266 277 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Dod01g0266 277 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0266 Dod-Chr1 5012666 5014287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0266 13 233 MYB Transcription Factor Family AT3G30210 49.327 1.21e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g0266 Myb_DNA-binding 8.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0266 K09422 - gmx:100785540 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0266 01 5012666 5014287 Dod01g0266 01 5012666 5014287 ECH