Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0256 ATGGCAACAAAGATGGGCCTCTCTTTGATGCATAAAGCAACTCCTTGTATTGTGTTACTGTTCCTACTTTCTTGCACTCACTTCACTCCAGCAGATGCTTATGATGCACTTGACCCAAATGGGAATATCACAATCAAATGGGATATCATAAGCTGGGCTCCTGATGGTTATGTTAATGGATTGAGTTTATCTAAGAAACAATTGAATGGACAGGCTGTTGTTACAATGAACAACTTCCAACAATATCGCCATATTGCAGCGCCTGGCTGGACACTAGGATGGACATGGGCAAAGAAGGAGGTTATATGGAGCATGATGGGAGGGCAGACCACTGAGCAAGGGGATTGTTCAAAGTTTAAGGGAAACCCCCCGCATTGCTGTAAAAAAGATCCAACAGTTGTGGATTTGCTTCCTGGCACACCTTACAACCAGCAAATTGCAAACTGCTGCAAAGGTGGAGATCCAACCAATGCAGTTGCATCATTTCAAGTGAGTGTGGGTAGAGCTGGTACTACTAACAGAACTGTCAAGGTGCCGAAGAACTTCACCTTGAAAGCGCCAGGTCCAGGTTATACTTGTGGTCCAGCAAAAATTGTGAGACCAACTCAGTTCATTCAAGCAGACAAAAGGAGAGTGACCCAAGCACTAATGACATGGAATGTGACATGCACATATTCACAGTTTCTAGCCCAGAAAACACCCACTTGCTGTGTTTCCCTCTCATCATTCTATAATGATACTATTGTGCCCTGCCCAACATGTGCATGTGGCTGCCAGGGCAACTCATCTCAGTCAGGGACCTGTGTAAATGCAGATACGCCACATTTGGCATCAGTGGTTGCTGGAAAGAAAAATTTTTCACCTTTAGTTCAATGTACTAGTCACATGTGTCCAGTCAGAGTCCACTGGCACGTTAAGGTTAACTACAAGGAGTACTGGCGCGTGAAGATCACTATTACTAATTTCAATTACAGGATGAATTATTCTGAGTGGAACTTGGTTATTCAACACCCAAACTTCGACAATCTGACTCAACTGTTTAGTTTCAACTACAAGTCATTAACTCCTTATGGATCAATAAATGATACAGCTATGCTTTGGGGAATGAAGTTCTATAATGATTTTCTCAGTGAAGCCGGCCCTCTTGGTAATGTACAATCAGAGCTACTCTTCCAAAAGGATAAATCGACTTTTACTTTTGATAAGGGGTGGGCTTTCCCTCGGAGGGTCTATTTCAATGGTGACAACTGTGTGATGCCACCACCTGATGCTTATCCAACGTTACCTAATGCTGGTTCTCAGAAAGAGGTTTCATTGCTTGTTTTAGTGATGGCTTCTTTGGTTTCCTTGGTATTTTATGCATATGCTTGA 1371 0.4289 MATKMGLSLMHKATPCIVLLFLLSCTHFTPADAYDALDPNGNITIKWDIISWAPDGYVNGLSLSKKQLNGQAVVTMNNFQQYRHIAAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKFKGNPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGDPTNAVASFQVSVGRAGTTNRTVKVPKNFTLKAPGPGYTCGPAKIVRPTQFIQADKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCACGCQGNSSQSGTCVNADTPHLASVVAGKKNFSPLVQCTSHMCPVRVHWHVKVNYKEYWRVKITITNFNYRMNYSEWNLVIQHPNFDNLTQLFSFNYKSLTPYGSINDTAMLWGMKFYNDFLSEAGPLGNVQSELLFQKDKSTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPTLPNAGSQKEVSLLVLVMASLVSLVFYAYA* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0256 456 PIRSF COBRA 6 456 IPR006918 GO:0010215|GO:0031225
Dod01g0256 456 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Dod01g0256 456 Pfam COBRA-like protein 72 226 IPR006918 GO:0010215|GO:0031225
Dod01g0256 456 PANTHER COBRA-LIKE PROTEIN 12 455 - -
Dod01g0256 456 PANTHER PROTEIN COBRA 12 455 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0256 Dod-Chr1 4911418 4914756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0256 17 454 COBRA Gene Family AT3G02210 71.652 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0256 - - gmx:100783820 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0256 01 4911418 4914756 Dod01g0256 01 4911418 4914756 ECH
Dod02g2384 02 52348868 52352465 Dod01g0256 01 4911418 4914756 PCT