Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0214 ATGGCATTCTTCAGTAAACTTGGAAGCCTACTGAAACATTCTGCTGTCAAGCACATCAATCATGATTTGTCTGCGTCAACTCCGTCAATTTTCCAGGCAATTAGATCCATGTCATCTGCAAAGCTTTTTGTCGGAGGTATTTCATATAACACAGATGAGATGAGTCTGCGAGAAGCTTTTGCACGCTATGGAGAAGTAATTGATGCAAGGGTTATTATGGATCGCGAGACTGGCAGGTCTAGAGGTTTTGGCTTCATAACTTATGCAACATCTGAGGATGCTTCTTCTGCCATTCAGGCCTTGGATGGCCAGGATCTTCATGGTCGTCAGATACGAGTGAATTATGCTACGGAAAGATCACGTCCAGGTTTTGGTGGTGGCGGTGGCGGTGGCTATGGTGGTGGTGGATATGGTGGTGGCGGCTATGGTGGTGGTGGTGGCTATGGAGGTAATGATAATAGGGGTGGAAGTTATGGAAGTAGTGGTTATGGTGCACTGGGCAGCTATGGTGGTGGCAATGCTGAAACTAGTTTTACTGGTGGTGGAGCTAGTAACTACCAATTCAATGATAATTCTGGTGGAGATATTGGCTCTCCTAGTGGTGAATTCAGCAGCAATTCTGGCTTGGGATATGATGGTCAGTTTGGTGGCAACCAAGATGGCAGTTCAGCCGCAGATGGTGAATCCACTGAACCATTTCGAGACAATCAACTGAGAGAAAACAATGATGAACCTGACGATTATGCACGGACCAACCGTGGGTAA 765 0.4641 MAFFSKLGSLLKHSAVKHINHDLSASTPSIFQAIRSMSSAKLFVGGISYNTDEMSLREAFARYGEVIDARVIMDRETGRSRGFGFITYATSEDASSAIQALDGQDLHGRQIRVNYATERSRPGFGGGGGGGYGGGGYGGGGYGGGGGYGGNDNRGGSYGSSGYGALGSYGGGNAETSFTGGGASNYQFNDNSGGDIGSPSGEFSSNSGLGYDGQFGGNQDGSSAADGESTEPFRDNQLRENNDEPDDYARTNRG* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0214 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Dod01g0214 254 MobiDBLite consensus disorder prediction 190 230 - -
Dod01g0214 254 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 188 - -
Dod01g0214 254 Gene3D - 31 154 IPR012677 -
Dod01g0214 254 CDD RRM_HP0827_like 41 116 - -
Dod01g0214 254 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 188 - -
Dod01g0214 254 SMART rrm1_1 41 114 IPR000504 GO:0003723
Dod01g0214 254 MobiDBLite consensus disorder prediction 190 254 - -
Dod01g0214 254 PRINTS Eggshell protein signature 193 211 - -
Dod01g0214 254 PRINTS Eggshell protein signature 158 168 - -
Dod01g0214 254 PRINTS Eggshell protein signature 127 142 - -
Dod01g0214 254 PRINTS Eggshell protein signature 36 52 - -
Dod01g0214 254 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
Dod01g0214 254 MobiDBLite consensus disorder prediction 232 254 - -
Dod01g0214 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0214 Dod-Chr1 3690543 3693704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0214 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 30.769 6.04e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0214 K12741 - gmx:100807155 278.1