Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0203 ATGGCAACTGCTGCGAGGACAGTGAAGGATGTTTCTCCTCATGAGTTTGTGAAGGCTTATTCTTCTCATCTCAAGCGTTCTGGCAAGATGGAGCTTCCTGAATGGACAGATATTGTGAAAACTGCAAGATTTAAAGAACTGGCTCCCTATGATCCTGACTGGTATTATGTTAGATCTGCCTCTATGGCAAGAAAGATTTATTTGAGGGGTGGTCTCGGCGTTGGTGCCTTCAAGAGGATCTATGGTGGAAGCAAGAGGAATGGAAGCCGCCCTCCACATTTCTGTGAGAGCAGTGGTGCTATTGCCAGACACATTCTGCAACAGTTGCAAGACATGAACATTATTGAGGTTGATCCAAAAGGAGGTAGGAGAATTACCTCCAGTGGTCGTAGGGATCTTGACCAAGTTGCTGGGCGAATTGTGGTTGCTCCTTGA 435 0.4644 MATAARTVKDVSPHEFVKAYSSHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRSASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQDMNIIEVDPKGGRRITSSGRRDLDQVAGRIVVAP* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0203 144 SMART Ribosomal_S19e_2 7 143 IPR001266 GO:0003735|GO:0005840|GO:0006412
Dod01g0203 144 Gene3D - 1 143 IPR036388 -
Dod01g0203 144 Pfam Ribosomal protein S19e 7 141 IPR001266 GO:0003735|GO:0005840|GO:0006412
Dod01g0203 144 ProSitePatterns Ribosomal protein S19e signature. 91 110 IPR018277 GO:0003735|GO:0005840|GO:0006412
Dod01g0203 144 PANTHER 40S RIBOSOMAL PROTEIN S19-3 4 143 - -
Dod01g0203 144 SUPERFAMILY "Winged helix" DNA-binding domain 7 142 IPR036390 -
Dod01g0203 144 PANTHER 40S RIBOSOMAL PROTEIN S19 4 143 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0203 Dod-Chr1 3421648 3423467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0203 1 144 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 83.333 1.42e-90 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0203 K02966 - gmx:100499800 276.174