Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0200 ATGGACTACACCACTTGGCCTGAATTTCAGTATAACCAAACCCAAACCCAAACCCAAAACCAAAACCAAACACTTCCTTCTTACCCTCCTTCTTCATCATCATCATCATACCCTCCTCCTCAATCTTCTTACACTGCCCATTACATTCCTTACCCGCAAAACCCTAACCCTTCTTCTTCTTCTCATGTTGTTGAACCTGTGGTGAACCCTCCTGGGGTTGATTCCTATGTTCCCCCATTGCCATTGCCATTGGCAACAACTACCCAAGTTGTGGGTCATGAACACAACCTTGTTCCCAATAATTTCTCGTACGGTCAAACTCATGTGGTTGATCCAAGCTCCTTGGTGGCTGCTGCTTCTGGGAACTACTTTGACCCCAATCCTCAAAATTGGGCTGCTACTGCTAGGGAAGCTGTTAGGCTCTATGGTGCTGACCCTGTTACCTATGCAGCTGTAACTGTAAATTCTATGCCATCAAATGGCTCAGAACAATTGACTGCTGCAAATCCTAACCCCACATGGTGGACTAATACCGCGACACAACCTCATGGTAATGGAACATGGAAGAAATACCCAAAGAAAGCTAAAACTAAGATTGTGCAACCTGCATATTGTGAAGTTTGCAAGATAGATTGCACTAGCAAGGAGATACTAGATCAGCATAAATTGGGGAAGAAGCACAAGAAGAATGTGGAGAGACTAAGAGAATTATTAAGACCACCACAAGTCCATGAACCAAGCCTGTGGTCATCTAATCTAGCTATAGGACCACAATTACCGAACGATAAGAGCAAATCTGCCAGTGGGAGTAAGAGTAAGAGGAAAACAGCTGAAACTCCTGAGGATTTGGAGAAAAAGAAGAAGAAGGTTCTCGAAGGAGGGGCAGCAGCTGAAGCAGTTAGAATATGTGCTATATGCAATGTGATATGTAACAGTGAAACAGTATTTAATTATCATCTTGCAGGACAAAAGCATACTGCTATGATGAAGAAAGCATCTGCACATACACAATCTATTGCTGGTTGA 1026 0.4327 MDYTTWPEFQYNQTQTQTQNQNQTLPSYPPSSSSSSYPPPQSSYTAHYIPYPQNPNPSSSSHVVEPVVNPPGVDSYVPPLPLPLATTTQVVGHEHNLVPNNFSYGQTHVVDPSSLVAAASGNYFDPNPQNWAATAREAVRLYGADPVTYAAVTVNSMPSNGSEQLTAANPNPTWWTNTATQPHGNGTWKKYPKKAKTKIVQPAYCEVCKIDCTSKEILDQHKLGKKHKKNVERLRELLRPPQVHEPSLWSSNLAIGPQLPNDKSKSASGSKSKRKTAETPEDLEKKKKKVLEGGAAAEAVRICAICNVICNSETVFNYHLAGQKHTAMMKKASAHTQSIAG* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0200 341 MobiDBLite consensus disorder prediction 245 266 - -
Dod01g0200 341 SMART ZnF_U1_5 200 234 IPR003604 GO:0003676|GO:0008270
Dod01g0200 341 SMART ZnF_U1_5 298 332 IPR003604 GO:0003676|GO:0008270
Dod01g0200 341 Gene3D Classic Zinc Finger 189 237 - -
Dod01g0200 341 MobiDBLite consensus disorder prediction 267 284 - -
Dod01g0200 341 SUPERFAMILY beta-beta-alpha zinc fingers 194 235 IPR036236 -
Dod01g0200 341 PANTHER - 25 334 - -
Dod01g0200 341 MobiDBLite consensus disorder prediction 1 65 - -
Dod01g0200 341 Pfam Zinc-finger of C2H2 type 303 325 - -
Dod01g0200 341 Pfam Zinc-finger of C2H2 type 204 227 - -
Dod01g0200 341 Gene3D Classic Zinc Finger 268 333 - -
Dod01g0200 341 SUPERFAMILY beta-beta-alpha zinc fingers 299 331 IPR036236 -
Dod01g0200 341 MobiDBLite consensus disorder prediction 245 284 - -
Dod01g0200 341 PANTHER ZINC FINGER RNA-BINDING PROTEIN 25 334 - -
Dod01g0200 341 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0200 Dod-Chr1 3393888 3396204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0200 199 334 C2H2 Transcription Factor Family AT5G61190 32.353 2.69e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0200 - - ahf:112797844 346.665