Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0173 ATGGGGTGTGTTAACTCCAAGAAAGCTATTGCCGGAGAAGAGTCATCGTCTTCGCCAGCAGCGGATACGGTAGCAGCATATGTGAGGTCCAATTCGAGGAGGAGCAGGAGGAGATGCGGAAACGGGTCGGGTCGGAACGGGTTTTTAGGGAAGTCATGTTCTTCTTCTAGGGTGGTGTCGGGTCAGGAGACCCGGGAAGTTGACCCGAAACCCGATGGTGAGGTGGTGGTGGCGGTGGAAGAGAAGAAGGGTGGTGGTGGGAAAGGAGGGAGCTTGAGGGCAAATGGGTCATTGAACATGAGGGTTGGGGTGCCAGTGTCACATAATAGGTTCGTGGAGGCTGAGCACATTGCAGCTGGTTGGCCACCTTGGTTGACATCTGTTGCTGGGGAAGCTATTCATGGATTGGTCCCTCTCAAGAGTGATTCCTTTGAGAAATTAGATAAGATTGGACAAGGTACATATAGTAGCGTGTTCCAAGCACGAGACGTTGAAACTGGGAGGTTGGTTGCCCTGAAGAAGGTGCGCTTTGACAATCTTCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAATAATTCTTCGCACACTCGACCACCCAAACATCATGAAGTTGGAGGGTATAATTACTTCCCAACTATCACATAGCATTTACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCCTCTCCTGACATCAAGTTCAGTGAAGCACAGATTAAATGTTACATGAGGCAGCTATTAAGTGGCATTGAGCAGTGTCATCTTCGAGGTATCATGCATAGAGACATTAAAGTATCCAACATATTAGTGAACAACGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACACTTGGCCCAGATAACAACAACCCTTTAACAAGTCGTGTGGTGACACTCTGGTATCGTCCTCCTGAGCTCTTGATGGGGTCAACAAACTATGGAGTTTCAGTGGATCTTTGGAGTGTAGGCTGTGTATTTGCAGAACTTTTCTTGGGGAAGCCCATCCTTAAGGGGAGAAATGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGGTCTCCACCTGACGAGTTCTGGAAAAAGTGTAAGCTTCCTCTTGCAACGATGTTTAAACCTCAGACAAATTACGAAAGCTCTCTTAAGGAGAGGTGTACAAGTTTTCCTGCAACTGCCGTAAGCCTAGTTGAGACTTTATTGTCCATTGACCCTTCCAAGCGTGGCACTGCCTCCTCTGCACTAATGTCTGAGTATTTCAGCACCATGCCTCATGCTTGTAGTCCATCACTCCTGCCGAAGTATCCACCAAGCAAGGAAATGGATGCTAAAATGCGGGAAGATTTACAGAGGAAAAAGGCTGGAGTTAAAGCGCCAGAGGCTGTAACATCAAAAAGGCAAAGACGAGTCCATAAAGTGTTGCAAGACCCAAACAATTACAATAAACCAGCTTTGAAAGAGGAAACGCAGAATATTTCTCAAAACACTAGTAGAGATGATGGCAAAGCACATCATACAAAGGGAAAAGTTGGACCTATGCACAAAGAGCTGCAGCCGAAATCTTTGCTTGATGCCAAGTCAGAGGCTGCCAAAGTGTCGAATGGGTCTAATGGCTACACTGAATACTCAGGACCAGCACCAGTCTCAGGATCTACTGGCTTCACATGGGCGAAAAGGAGAAAAGATGCTACATCGACGTTATCAGATGGATCGAGAAGTAAAATCAGTGGACTGGATCCAAACTTTGCAAAAGGCACATATGATTTAACAAAACATGGGATAGATGTTACTGAAAGAAATCATAGTTTCAGCTTAAGCCAACAGGATGACACTTCCAAGCATGCGTTACAAAAGCACCAGGCTCGTCATGCTCCAGGAGAATCGTTCGACATAGCTGATGCATACCAATCAAGTTATTACTTGGACTTTGATCCCACGGAAAGAGCAGATTCTCTGCTAAGTACTCAGGGCCACATAAATGTAGAGTTGTTGCATTGGAATGAAAATGGTATGCGGCGAGCAGTTCGTAAATCAAGGTTTGGATGA 2070 0.4541 MGCVNSKKAIAGEESSSSPAADTVAAYVRSNSRRSRRRCGNGSGRNGFLGKSCSSSRVVSGQETREVDPKPDGEVVVAVEEKKGGGGKGGSLRANGSLNMRVGVPVSHNRFVEAEHIAAGWPPWLTSVAGEAIHGLVPLKSDSFEKLDKIGQGTYSSVFQARDVETGRLVALKKVRFDNLQPESIRFMAREIIILRTLDHPNIMKLEGIITSQLSHSIYLVFEYMEHDLAGLVSSPDIKFSEAQIKCYMRQLLSGIEQCHLRGIMHRDIKVSNILVNNEGVLKIGDFGLANTLGPDNNNPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRNEVEQLHKIFKLCGSPPDEFWKKCKLPLATMFKPQTNYESSLKERCTSFPATAVSLVETLLSIDPSKRGTASSALMSEYFSTMPHACSPSLLPKYPPSKEMDAKMREDLQRKKAGVKAPEAVTSKRQRRVHKVLQDPNNYNKPALKEETQNISQNTSRDDGKAHHTKGKVGPMHKELQPKSLLDAKSEAAKVSNGSNGYTEYSGPAPVSGSTGFTWAKRRKDATSTLSDGSRSKISGLDPNFAKGTYDLTKHGIDVTERNHSFSLSQQDDTSKHALQKHQARHAPGESFDIADAYQSSYYLDFDPTERADSLLSTQGHINVELLHWNENGMRRAVRKSRFG* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0173 689 MobiDBLite consensus disorder prediction 1 72 - -
Dod01g0173 689 SMART serkin_6 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g0173 689 PANTHER CELL DIVISION PROTEIN KINASE 82 602 - -
Dod01g0173 689 ProSiteProfiles Protein kinase domain profile. 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g0173 689 SUPERFAMILY Protein kinase-like (PK-like) 140 433 IPR011009 -
Dod01g0173 689 MobiDBLite consensus disorder prediction 47 62 - -
Dod01g0173 689 MobiDBLite consensus disorder prediction 535 556 - -
Dod01g0173 689 MobiDBLite consensus disorder prediction 612 633 - -
Dod01g0173 689 MobiDBLite consensus disorder prediction 485 521 - -
Dod01g0173 689 Pfam Protein kinase domain 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g0173 689 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Dod01g0173 689 CDD STKc_CDK9_like 144 428 - -
Dod01g0173 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Dod01g0173 689 MobiDBLite consensus disorder prediction 10 30 - -
Dod01g0173 689 MobiDBLite consensus disorder prediction 490 505 - -
Dod01g0173 689 PANTHER CYCLIN-DEPENDENT KINASE 82 602 - -
Dod01g0173 689 MobiDBLite consensus disorder prediction 506 521 - -
Dod01g0173 689 Gene3D Transferase(Phosphotransferase) domain 1 227 467 - -
Dod01g0173 689 Gene3D Phosphorylase Kinase; domain 1 136 226 - -
Dod01g0173 689 MobiDBLite consensus disorder prediction 538 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0173 Dod-Chr1 2978945 2984877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0173 142 483 Core Cell Cycle Gene Families AT5G10270 46.499 1.39e-106 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Dod01g0173 Pkinase 3.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0173 - - lja:Lj1g3v2982400.1 917.146