Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0171 ATGGATGGAGGTCGTAGTGGTGTGGACATGTCTCGTCATTATAACTTTGGAAAAACACTTGGCATCGGATCCTTTGGCAAGGTGAAAGGTGCGGAACATTTATTGACTGGTCATAAAGTTGCCATCAAGATCCTTAACTGTCGCAGGATAAAGAACATGGGAATGGAAGAAAAAGTGAGAAGAGAAATAAAAATTTTAAGATTATTCATGCATCCTCACATTATAAGGCTTTATGAGGTTGTAGAAACTCCAGCTGACATTTACTTCGTTATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTAGAAAAGGGCAGGTTGCCAGAGGATGAAGCCCGCAAAATTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACCTGAAGCCTGAGAATATACTTTTGGACTCCAGATTCAATGTCAAAATTGCTGATTTTGGCTTGAGCAACATCATGAGGGATGGTCACTTTCTTAAGACAAGTTGCGGAAGCCCTAACTATGCAGCTCCAGAGGTTATCTCTGGGAAACTATATGCTGGACCTGAAGTAGACGTTTGGAGCTGTGGTGTAATTCTATATGCTCTTCTTTGTGGCATTCTTCCTTTTGATGATGAGAACATTCCAAATCTCTTCAAGAAAATTAAGGGTGGGATATACACTCTTCCTAGTCATCTGTCACCTGGAGCTAGAGATTTGATACCAAGAATGCTTGTGGTTGATCCTATGAAGAGGATCACTATACCTGAGATTCGTCAACACCCATGGTTCCAAGTTCGTCTTCCGCGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAAGCTAAAAAGATTGATGAGGAGACCCTTCAGGAAGTGGTGAATATGGGATTTGACAGGAATCAGTTGGTTGAATCACTTTGCAACAGGATACAAAATGAGGGTACCGTAGCATACTATTTGTTATTGGACAACAGATTCCGCATTTCTGGTGGCTATCTTGGAGCTGAGTTTCAAGAGTCAATGGATTCTGGTTTTGACCAAATGCATCCCAGTGAAGTTGCTTCTTCAGTTGCTGGGCACCGCTTTCCGGCCTATGTGGATAATCCAGGAGTAGGATTGAGACCACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTAGTGCCCCTCCTCGTGAAATAATGACCGAGGTCCTTAATGCTCTGCAAGAATTACATGTTTCTTGGAAGAAAATTGGACACTACAACATGAAGTGCAGGTGGGTTGCTGGCGTACCTGGTCATCATGGAGGAATGGTTAACAATGCCGTACCTAATAATCATTACTATGGAGATGATTCCAGCATTATTGAGAATAATGCTGTTTCTAGTCCAAATGTGGTCAAGTTTGAAGTGCAGCTGTACAAAGCTCGGGAAGAGAAGTATCTGCTTGATCTTCAAAGGGTGGAAGGCCCACAGTTTCTTTTCTTGGATCTTTGTGCTGCTTTCCTTACGCAGCTTGAGGTTCTCTAG 1530 0.4275 MDGGRSGVDMSRHYNFGKTLGIGSFGKVKGAEHLLTGHKVAIKILNCRRIKNMGMEEKVRREIKILRLFMHPHIIRLYEVVETPADIYFVMEYVKSGELFDYIVEKGRLPEDEARKIFQQIISGVEYCHRNMVVHRDLKPENILLDSRFNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGILPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRITIPEIRQHPWFQVRLPRYLAVPPPDTMQQAKKIDEETLQEVVNMGFDRNQLVESLCNRIQNEGTVAYYLLLDNRFRISGGYLGAEFQESMDSGFDQMHPSEVASSVAGHRFPAYVDNPGVGLRPQFPVERKWALGLQSSAPPREIMTEVLNALQELHVSWKKIGHYNMKCRWVAGVPGHHGGMVNNAVPNNHYYGDDSSIIENNAVSSPNVVKFEVQLYKAREEKYLLDLQRVEGPQFLFLDLCAAFLTQLEVL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0171 509 Pfam Kinase associated domain 1 466 507 IPR001772 -
Dod01g0171 509 CDD AMPKA_C 384 506 - -
Dod01g0171 509 CDD STKc_AMPK_alpha 12 266 - -
Dod01g0171 509 SUPERFAMILY KA1-like 323 508 IPR028375 -
Dod01g0171 509 CDD UBA_SnRK1_plant 288 328 - -
Dod01g0171 509 PANTHER SERINE/THREONINE KINASE 12 507 - -
Dod01g0171 509 ProSiteProfiles Protein kinase domain profile. 14 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g0171 509 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 287 327 IPR015940 -
Dod01g0171 509 SMART uba_6 289 326 IPR015940 -
Dod01g0171 509 SUPERFAMILY Protein kinase-like (PK-like) 12 279 IPR011009 -
Dod01g0171 509 SUPERFAMILY UBA-like 277 325 IPR009060 GO:0005515
Dod01g0171 509 Gene3D Kinase associated domain 1, KA1 390 507 - -
Dod01g0171 509 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 460 508 IPR001772 -
Dod01g0171 509 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 12 507 - -
Dod01g0171 509 SMART serkin_6 14 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g0171 509 Pfam Protein kinase domain 14 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g0171 509 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Dod01g0171 509 Pfam UBA/TS-N domain 288 324 IPR015940 -
Dod01g0171 509 Gene3D Transferase(Phosphotransferase) domain 1 6 337 - -
Dod01g0171 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0171 Dod-Chr1 2937892 2947886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0171 14 266 CBL-interacting serine-threonine protein kinases AT4G24400 51.969 1.95e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Dod01g0171 Pkinase 2.5e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0171 K07198 - gmx:100796687 900.582