Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0165 ATGGGAAGATCACCATGCTGTGACAAAGTGGGCTTAAAGAAAGGACCATGGACACCTGAGGAGGATCAGAAGCTTTTGGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCAACAAAAGCTGGACTTCAAAGGTGTGGCAAGAGCTGCAGATTGAGATGGACCAATTATCTAAGGCCTGATATTAAGAGGGGAAAATTCAGTCTACAAGAAGAACAAACCATCATTCAACTTCATGCACTCTTAGGGAACAGGTGGTCAGCAATAGCCACACACTTGCCAAAGAGAACAGACAACGAGATCAAGAACTACTGGAACACGCATCTTAAGAAGAGGCTAACCAAGATGGGGATCGACCCTGTGACCCACAAGCCCAAGAATGATGCTCTCCTCTCCAGTGACGGCCATTCCAAGATCGCCGCAAACCTTAGCCACATGGCTCAGTGGGAGAGTGCCAGGCTTGAGGCTGAAGCAAGGTTGGTCAGGGAATCGAAACTACGATCACATGCATTGCACCTTGCAACTTCTACCTTTCCATCATCATCATCTTCATCATGTTCAGCTCTAGTTATGAACAAACCAAGTGAGTCATCAATAACCAAGGATTGGAGTAATGGAGGGTGGCTGAAATCTAATGATGGCAATGGTGGCGGCATAGCAATTGGGATAAGTGGTGGTGATGGTGACCTTGAGTCCTCTACATCAACCTTATCTTTCTCTGAGAACAATGCACCTCCCATTATGAGTACTAGTGGATCTACCACACTTGGAGAAAACAATAATAATGCAATGCATATGATTGAGTTCGTAGGCACTACTACTACTACTACTAATTCAGGCTCTTCTGAGGGTAATGGTAGGATTGTGAAAGAAGAAGGTGAGCAAGAGTGGAAAGGCTATGATGATGAAGAATACAAAGATGATGGTATGGAGAATTCAATGCCTTTCAATTCAAGCCTGCATGAGTTGACAATGACAATGGAAACCACGTGGGGTTCTCATGATGATGATGATCCTCTTAGGACCAGTGCTGGGGATGATGCCATTGTTGAGGAAGGGTTCACCAATCTCTTGCTGAGTGCAAACTCCAATAATGAATTGAGTTTGTCATCTGAAGGTGGCAGTGGAGAGACCAATAAAAATTGTGATGGTGGAAGTGGCAGTGATGACTCGTATGAAGATAGCAAGAACTACTGGAACAGCATTCTTCATTTAGTGAACTCTTCCCCTTCTGACATGTTTTGA 1254 0.4458 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPTKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGHSKIAANLSHMAQWESARLEAEARLVRESKLRSHALHLATSTFPSSSSSSCSALVMNKPSESSITKDWSNGGWLKSNDGNGGGIAIGISGGDGDLESSTSTLSFSENNAPPIMSTSGSTTLGENNNNAMHMIEFVGTTTTTTNSGSSEGNGRIVKEEGEQEWKGYDDEEYKDDGMENSMPFNSSLHELTMTMETTWGSHDDDDPLRTSAGDDAIVEEGFTNLLLSANSNNELSLSSEGGSGETNKNCDGGSGSDDSYEDSKNYWNSILHLVNSSPSDMF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0165 417 Gene3D - 69 116 - -
Dod01g0165 417 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 414 - -
Dod01g0165 417 CDD SANT 69 112 IPR001005 -
Dod01g0165 417 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod01g0165 417 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod01g0165 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod01g0165 417 CDD SANT 16 61 IPR001005 -
Dod01g0165 417 MobiDBLite consensus disorder prediction 223 262 - -
Dod01g0165 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod01g0165 417 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod01g0165 417 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod01g0165 417 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 414 - -
Dod01g0165 417 Gene3D - 13 66 - -
Dod01g0165 417 MobiDBLite consensus disorder prediction 231 262 - -
Dod01g0165 417 SMART sant 13 63 IPR001005 -
Dod01g0165 417 SMART sant 66 114 IPR001005 -
Dod01g0165 417 MobiDBLite consensus disorder prediction 369 396 - -
Dod01g0165 417 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod01g0165 417 MobiDBLite consensus disorder prediction 276 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0165 Dod-Chr1 2840257 2843491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0165 353 417 MYB Transcription Factor Family AT3G01140 45.833 5.57e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g0165 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0165 K09422 - gmx:100101835 493.426