Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0127 ATGGAAAGGTACTATCTGAGTAGCGACGAGAACTGCCGGATTTATTTGACCTATGGAGTGTGTCAGAAGAACAAGGCTGAGCGGATTGGAGGGCATGCACTTGATGGCTGTCAAGAGTTCATGCCAAGTGGAGAAGAAGGAACACCTGCTGCTCTCACCTGTGCTGCTTGTCACTGCGAAAGGAGCTACCATAAGCTTGAGGGTTTGAAACTCACCATGAAGAGATACTATCTGAGTAGCGACGAGAACTGCCGAATTTATTTGACATATGGAGTGTGTCAGAAGAACAAGGCTGAGCGGATTGGAGGGCATGCACTTGATGGCTGTCAAGAGTTCATGCCAAGTGGAGAAGAAGGAACACCTGCTGCTCTCACCTGTGCTGCTTGTCACTGCGAAAGGAGCTACCATAAGCTTGAGGTGCACACTGAAGACGTGGACAATGGCCCTTCCCCTCCTCCTACTGCTACACAACAAGTTTGA 480 0.4938 MERYYLSSDENCRIYLTYGVCQKNKAERIGGHALDGCQEFMPSGEEGTPAALTCAACHCERSYHKLEGLKLTMKRYYLSSDENCRIYLTYGVCQKNKAERIGGHALDGCQEFMPSGEEGTPAALTCAACHCERSYHKLEVHTEDVDNGPSPPPTATQQV* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0127 159 Pfam ZF-HD protein dimerisation region 89 139 IPR006456 -
Dod01g0127 159 Pfam ZF-HD protein dimerisation region 17 65 IPR006456 -
Dod01g0127 159 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 90 139 IPR006456 -
Dod01g0127 159 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 18 67 IPR006456 -
Dod01g0127 159 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 67 - -
Dod01g0127 159 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 88 141 - -
Dod01g0127 159 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 90 139 IPR006456 -
Dod01g0127 159 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 18 66 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0127 Dod-Chr1 2442210 2447858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0127 16 67 Zinc finger-homeobox gene family AT3G28917 66.038 7.26e-18 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dod01g0127 ZF-HD_dimer 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0127 - - ahf:112740679 114.39