Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0126 ATGGGAAGACCACCTTGTTGTGATAAAGAAGGTGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGATATCATATTGGTCTCTTATATACAGGATCATGGTCCTGGCAATTGGAGGGCTGTTCCCACCAAGACAGGCTTGTCAAGGTGCAGTAAGAGTTGTAGACTTAGATGGACAAATTACTTGAGGCCAGGAATCAAACGTGGCAACTTTACTGAGCAAGAGGAGAAGATGATTATCCATCTTCAAGATCTTTTAGGAAACAGGTGGGCTGCTATAGCTTCATACCTACCACAGAGGACAGATAATGACATAAAAAACTACTGGAACACTCATTTGAAAAAGAAGCTGAAGAAGTTGCAAGCAGGTTCTGAAGGCAATAACTTGGGAGATGGGTTTTCAGCATCACAGCCAATTCCTAGGGGCCAGTGGGAGAGAAGGCTCCAAACTGACATACAAATGGCCAAGAGAGCTCTCAGTGAAGCACTTTCACCAGAGAAGCCATCTTGTTTTGCTGCATCATCAAACCCCCCCAATAATAATAGCTCCTTCACTTGCACTACAAAACCAACACAATCTTTGTGCTATGCTTCAAGTGCTGATAACATAGCTCGTTTGTTGAAGGGGTGGATGAAGAATCCACCGAAGTCCTCTAGAACTAACTCAGCTTTGACCCAAAATTCCTTCAACAACTTAGCTATTGGTGGTGGCAATGACACTGCTTCTAGTGAAGGAATCCCAAGTGGGGCAAAGGGAAGCTCTAGTGCTGAATTGTCTGAAACTTTTGAGTCCTTGTTTGGTTTGGAGTCTCTTGATTCTTCCAATTCTGAGTTCTCTCAGTCTTTGTCCCCTGATGCTACTGTCTTTCAAGATGAAAGCAAGCCAGATATTGGTGCTGAAATGCAATTCTCTTTGCTTGAGAAGTGGCTTCTAGAAGAGGTTGGTTGTCAAGAGAAAGTTATTAGCTCCAGTGATGCCAAATTTTTCTAG 987 0.4336 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQDHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQAGSEGNNLGDGFSASQPIPRGQWERRLQTDIQMAKRALSEALSPEKPSCFAASSNPPNNNSSFTCTTKPTQSLCYASSADNIARLLKGWMKNPPKSSRTNSALTQNSFNNLAIGGGNDTASSEGIPSGAKGSSSAELSETFESLFGLESLDSSNSEFSQSLSPDATVFQDESKPDIGAEMQFSLLEKWLLEEVGCQEKVISSSDAKFF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0126 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod01g0126 328 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod01g0126 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dod01g0126 328 CDD SANT 16 61 IPR001005 -
Dod01g0126 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod01g0126 328 SMART sant 66 114 IPR001005 -
Dod01g0126 328 SMART sant 13 63 IPR001005 -
Dod01g0126 328 Gene3D - 13 66 - -
Dod01g0126 328 MobiDBLite consensus disorder prediction 233 253 - -
Dod01g0126 328 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 322 - -
Dod01g0126 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dod01g0126 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod01g0126 328 CDD SANT 69 111 IPR001005 -
Dod01g0126 328 Gene3D - 69 128 - -
Dod01g0126 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 322 - -
Dod01g0126 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0126 Dod-Chr1 2421569 2423335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0126 1 312 MYB Transcription Factor Family AT5G62470 53.276 1.29e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g0126 Myb_DNA-binding 4.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0126 K09422 - gmx:780543 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2479 02 54761716 54763740 Dod01g0126 01 2421569 2423335 PCT