Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0118 ATGTTCCACTCCCATGAAGACCACCAAGATGACGAACTTCCTTCACCCTCTCTCAACTCTTTCCCCTCTTTCCCACCACCCCAACACTTCCTAGCTCAAACAAACACACCCTCTCTCTTTCTCAAAATGGGTTCACACCAATTCCTTAATGAAAAATTCCTAGGGTGTGTTGTAGGCGGTGCACCTTTCATGTTGAAGCGATCCATGTCGTTTTCTGGCATTGACAACAAGTGCGAGGAGTTCCATGGCGACGAGGACTTGTCAGATGAGGGGCTCCAGTTTGGGGAGAAGAAGAAGAGGCTGAACATGGAGCAGGTGAAGGCACTTGAGAAGAGCTTTGAGTCAGGGAACAAGCTTGAGGCAGAGAGGAAGGTGCAGCTAGCTAAGGCTTTGGGGCTCCAACCAAGACAGATCGCCATATGGTTCCAGAATAGGAGGGTGAGGTGGAAAATAAAGCAACTTGAGAAGGAATATGAGGTCCTCAAGAAGCAGTTTGAAGCAGCCAAGGCTGATCATGATGCCCTTGTGGCTCAGAATCAGAAATTACACGCTGAGTTACAAGCTCTAAACAGTGGGGATTATTGTGAAACAATCAGCCTTAAGAAAGGAACTGAGGGAGGTTCTTGTAGCAATGGAAGTAATAGCAGCTCAGACATTAATTTAGATCTCCCAAGAGCACCAGTTATAAATGATCCTGTATCTTCTCAGAAAGGAATAAGCCTTCAATCCCCCTCCCCAAAACCCACAAGCATAACTCAGTTCCTTCAACACTCATCAAGACCGGACCATCAAGATGAAGGCTTCTGCAATTTGTTTCACCACATTGATGAGCAGCAGAACTTTTGGCCCTGGCAGGAGCAGCACCATTTCCATTGA 876 0.468 MFHSHEDHQDDELPSPSLNSFPSFPPPQHFLAQTNTPSLFLKMGSHQFLNEKFLGCVVGGAPFMLKRSMSFSGIDNKCEEFHGDEDLSDEGLQFGEKKKRLNMEQVKALEKSFESGNKLEAERKVQLAKALGLQPRQIAIWFQNRRVRWKIKQLEKEYEVLKKQFEAAKADHDALVAQNQKLHAELQALNSGDYCETISLKKGTEGGSCSNGSNSSSDINLDLPRAPVINDPVSSQKGISLQSPSPKPTSITQFLQHSSRPDHQDEGFCNLFHHIDEQQNFWPWQEQHHFH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0118 291 Pfam Homeodomain 97 150 IPR001356 GO:0003677
Dod01g0118 291 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 48 291 - -
Dod01g0118 291 Coils Coil 144 178 - -
Dod01g0118 291 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Dod01g0118 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 291 IPR045224 GO:0003700
Dod01g0118 291 PRINTS Lambda-repressor HTH signature 123 132 IPR000047 GO:0003677
Dod01g0118 291 PRINTS Lambda-repressor HTH signature 132 148 IPR000047 GO:0003677
Dod01g0118 291 MobiDBLite consensus disorder prediction 1 28 - -
Dod01g0118 291 MobiDBLite consensus disorder prediction 233 258 - -
Dod01g0118 291 Pfam Homeobox associated leucine zipper 152 190 IPR003106 GO:0006355|GO:0043565
Dod01g0118 291 SUPERFAMILY Homeodomain-like 91 153 IPR009057 -
Dod01g0118 291 SMART HOX_1 95 156 IPR001356 GO:0003677
Dod01g0118 291 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Dod01g0118 291 MobiDBLite consensus disorder prediction 233 260 - -
Dod01g0118 291 CDD homeodomain 97 153 IPR001356 GO:0003677
Dod01g0118 291 Gene3D - 93 160 - -
Dod01g0118 291 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0118 Dod-Chr1 2260677 2263200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0118 59 291 Homeobox Transcription Factor Family AT1G69780 49.200 1.85e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod01g0118 Homeodomain 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0118 K09338 - gmx:100816097 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2495 02 55082613 55085598 Dod01g0118 01 2260677 2263200 PCT