Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0109 ATGGGTTACCTGAGCAAAGCTTCAAGGACCCTGAAGCAATCAAATTACCTCTCACTGTTGCGCAATTCTACCCTTTTCCCATTCAACCCTTTAACCAGCACAGCCACCACCACAACCCATCAACAACGTGCACTCTTCTGTTCCCAGACACGCCAACAAAACAGCAGGGATAAGAGTGTCATAGATTTGAGCCAGTATCCTCCAGAGCTCATCAGAAACTTCTCAATCATTGCACACGTTGATCATGGCAAGTCCACCCTCGCTGATCGCCTCCTAGAGCTCACTGGAACCATAAAAAAAGGCCATGGCCAGCCCCAGTACCTCGATAAGTTGCAGGTTGAGAGGGAAAGGGGAATCACAGTTAAAGCGCAGACAGCAACAATGTTCTATAAGCACATAAAAAATGGTGATGATGGTATTGATGGAAAAGAGTCACCTCGATTTTTGCTGAATCTTATTGACACTCCTGGCCATGTAGATTTTAGCTATGAGGTGTCAAGGTCACTAGCAGCTTGTCAAGGTGTCCTTTTGGTTGTTGATGCTGCACAAGGAGTCCAAGCTCAAACGGTTGCTAACTTTTACCTTGCTTTTGAGTCTAACCTGACAATTGTACCTGTAATAAACAAGATTGACCAGCCAACTGCTGATCCTGATCGTGTTAAAGCCCAATTGAAATCGATATTTGATCTTGACCCAAGTGATGCATTGCTAACATCTGCTAAAACTGGGCAAGGTCTTGAGCAAGTCCTTCCGGCAGTTATAGAGCGCATACCTCCACCTCCTGGGAGGAGCGAATCTCCTTTGCGCATGCTTTTGCTTGATTCATATTATGATGAATACAAGGGGGTAATATGCCATGTTGCTGTTGTCGATGGTGTTCTGCACAAGGGGGATAAGATTTCATCTGCCGCCACTGGTCAGTCATATGAAGCTTTGGATATTGGCATCATGCATCCTGAACTTACACCTACCGGAATCTTGCATACTGGGCAAGTTGGTTATGTTGTAAGTGGCATGCGCTCAACCAAAGAGGCACGTGTTGGAGATACAATTCACCATACTCGAACCACTGTAGAGCCTCTTCCAGGATTTAAACCAGCAAAACATATGGTATTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCGCTCAACCATGCTATAGAGAGGCTGACATGTAATGATGCCAGCGTCTCTATTACTAAAGAAACTAGCACAGCTCTAGGTCTGGGGTTCAGGTGTGGGTTCTTAGGCTTACTTCACATGGATGTTTTTCACCAAAGGCTTGAGCAGGAGTATGGAGCTCATGTTATCTCCACTGTTCCTACTGTACCTTACATATTTGAATTCTCTGATGGAAGCAAATTAGAAGTTCAGAATCCTGCTTCATTACCCTCTAATCCCAAGCAACGAGTGACAGCCTGTTGGGAACCTACAGTAATAGCTACTATAATCATTCCTAGTGAGTATGTGGGACCTGTTATTACGCTTTGCTCTGAGCGTAGGGGTCAACAATTGGAGCATTCATTCATTGACAGTCAACGAGCATTCATGAAGTATCGAATGCCTTTGAGAGAAATTGTTGTCGACTTTTATAATGAATTGAAAAGCATAACATCAGGCTATGCATCATTTGATTATGAGGATTCCGATTATCAACAATCTGATCTAGTGAAACTCGATATTCTCTTAAATGGGCAACCTGTTGACGCGATGGCAACTATTGTTCACAACATGAAAGCATATCGTGTTGGACGTGAACTGGTGGAGAAATTGAAGAAAGTCATAGACAGGCAAATGTTTGAGATAAGCATACAAGCTGCGATTGCGTCAAAGGTTATAGCAAGAGAGACGATTTCTGCATTAAGGAAGAATGTTCTTGCCAAGTGTTATGGTGGTGATGTTACTCGAAAGCGGAAGCTGTTGGAGAAGCAAAAGGAAGGAAAGAAGCGAATGAAACGTGTTGGTTCTGTTGATATACCACAAGAAGCATTCCATGAACTATTGAAGGTTTCATAG 2025 0.4346 MGYLSKASRTLKQSNYLSLLRNSTLFPFNPLTSTATTTTHQQRALFCSQTRQQNSRDKSVIDLSQYPPELIRNFSIIAHVDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHIKNGDDGIDGKESPRFLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRVKAQLKSIFDLDPSDALLTSAKTGQGLEQVLPAVIERIPPPPGRSESPLRMLLLDSYYDEYKGVICHVAVVDGVLHKGDKISSAATGQSYEALDIGIMHPELTPTGILHTGQVGYVVSGMRSTKEARVGDTIHHTRTTVEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSITKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEFSDGSKLEVQNPASLPSNPKQRVTACWEPTVIATIIIPSEYVGPVITLCSERRGQQLEHSFIDSQRAFMKYRMPLREIVVDFYNELKSITSGYASFDYEDSDYQQSDLVKLDILLNGQPVDAMATIVHNMKAYRVGRELVEKLKKVIDRQMFEISIQAAIASKVIARETISALRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0109 674 Gene3D Translation factors 264 361 - -
Dod01g0109 674 Gene3D - 558 632 IPR038363 -
Dod01g0109 674 Hamap Elongation factor 4 [lepA]. 67 674 IPR006297 GO:0005525
Dod01g0109 674 Pfam Elongation factor G C-terminus 479 564 IPR000640 -
Dod01g0109 674 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 109 124 IPR031157 -
Dod01g0109 674 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 58 672 - -
Dod01g0109 674 TIGRFAM small_GTP: small GTP-binding protein domain 74 249 IPR005225 GO:0005525
Dod01g0109 674 CDD LepA 72 260 - -
Dod01g0109 674 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 69 261 IPR000795 GO:0003924|GO:0005525
Dod01g0109 674 SUPERFAMILY EF-G C-terminal domain-like 370 447 IPR035647 -
Dod01g0109 674 TIGRFAM lepA: elongation factor 4 70 673 IPR006297 GO:0005525
Dod01g0109 674 CDD EF4_II 268 353 - -
Dod01g0109 674 Pfam Elongation factor Tu GTP binding domain 71 258 IPR000795 GO:0003924|GO:0005525
Dod01g0109 674 Pfam GTP-binding protein LepA C-terminus 566 672 IPR013842 -
Dod01g0109 674 PRINTS GTP-binding elongation factor signature 151 161 IPR000795 GO:0003924|GO:0005525
Dod01g0109 674 PRINTS GTP-binding elongation factor signature 203 212 IPR000795 GO:0003924|GO:0005525
Dod01g0109 674 PRINTS GTP-binding elongation factor signature 116 124 IPR000795 GO:0003924|GO:0005525
Dod01g0109 674 PRINTS GTP-binding elongation factor signature 73 86 IPR000795 GO:0003924|GO:0005525
Dod01g0109 674 SUPERFAMILY EF-G C-terminal domain-like 478 572 IPR035647 -
Dod01g0109 674 Gene3D Elongation Factor G (Translational Gtpase), domain 3 362 443 - -
Dod01g0109 674 Gene3D - 444 557 - -
Dod01g0109 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 282 IPR027417 -
Dod01g0109 674 CDD EF4_III 369 444 - -
Dod01g0109 674 PANTHER TRANSLATION FACTOR GUF1-RELATED 58 672 IPR006297 GO:0005525
Dod01g0109 674 SUPERFAMILY Translation proteins 259 356 IPR009000 -
Dod01g0109 674 CDD lepA_C 479 558 IPR035654 -
Dod01g0109 674 Gene3D - 69 262 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0109 Dod-Chr1 2068474 2074471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0109 71 212 Eukaryotic Initiation Factors Gene Family AT1G56070 42.177 9.27e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0109 K21594 - gmx:100781092 1195.65