LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g0103	ATGCCTCGAGCTACAGTTGAGATGGGAAGAAACATAACGGAAGCCAAAAGCAAGCACGCGATGTTAGTTGCTGTTGGCATGGGTCCCAACGTAGACGAAGCAGGTGCAGGTGCTGACGTGCAGATATCAGATTATGAGAGCGAGCTTGAAATAATGCAGACTATGACCAAAGAGGAGTACTTGGCCACTTTAAGGAGAAAGAGCAGTGGATTCTTAAGAGGCGTCTCAAAGTATGGGGGTGTTGCAAGGCACCATCACAATGTTAGATGGGAAGCAAGGATAGGGAGGGCTTTTGGAAACAAATATCTCTACCTTGGCACCTACAGCACCCAAGAGGAAGCTGCTCGTGCTTATGACATTGCAGCCATTGAATACAGAGGAATTAATTCTGTAACAAACTTTGATTTGAGTAATTACATAAGATGGTTAAAGCCTGAAGGACAAAATATCCCAAAGTCTCAAGCAACAAGTCTTTGA	477	0.4444	MPRATVEMGRNITEAKSKHAMLVAVGMGPNVDEAGAGADVQISDYESELEIMQTMTKEEYLATLRRKSSGFLRGVSKYGGVARHHHNVRWEARIGRAFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINSVTNFDLSNYIRWLKPEGQNIPKSQATSL*	159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g0103	158	SMART	rav1_2	77	141	IPR001471	GO:0003700\|GO:0006355
	Dod01g0103	158	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	39	154	-	-
	Dod01g0103	158	SUPERFAMILY	DNA-binding domain	76	137	IPR016177	GO:0003677
	Dod01g0103	158	Pfam	AP2 domain	76	127	IPR001471	GO:0003700\|GO:0006355
	Dod01g0103	158	Gene3D	AP2/ERF domain	76	137	IPR036955	GO:0003700\|GO:0006355
	Dod01g0103	158	ProSiteProfiles	AP2/ERF domain profile.	77	135	IPR001471	GO:0003700\|GO:0006355
	Dod01g0103	158	CDD	AP2	76	137	IPR001471	GO:0003700\|GO:0006355
	Dod01g0103	158	PANTHER	BINDING PROTEIN, PUTATIVE-RELATED	39	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g0103	Dod-Chr1	2001362	2005442	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g0103	45	155	AP2-EREBP Transcription Factor Family	AT3G54320	75.893	8.41e-47	154

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dod01g0103		AP2	1.7e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g0103	-		-	ahf:112716370	202.986