Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0082 ATGCCGCCAAAGACAGTGAAGAGAGGTGCCGCGGCGAAGAGAGCAAAAGCTGCTCTTGAGAGCAACAACAACCAGCAGCTAGAACCTGAAGCTGCGGAAGCGGCTGTGAATCATCAAGAAGAAGAAGAAGAAAACGCAGCTAATGAGGAAAAAAGTGTTGTTGTGGAGGAGGGGAAGCCCGATGATGTGAAAGACAATGAAGAGGAGGTTAAGGAATCCACAGATGAATATGAAAAAGATGAACACTTGGATTTTGAGGATAACTATCCTGAGTATGAACCTTTGGAGTATGGTGGGGATGACTATGGTGAGAATGAAAATGAACAGGATGAGGGTCAGGATGTGGGAGATGAAGTAGAGGAAGAACAAGAAGAGAACGTAGGTGAAGAAGAGGGTGATACAGGTGAAGAAGAAGTTGAATATATTTATGAAGAAGTTGAGATCGATGAAGACGATGAGCATGCTGATGAGGAGCATGAGCCTGCACAAATTGCTGATGTGGAGGAAGAGAAACACTCTGAAGTTGTAAAGGAGAGGCAAAAGCAGAAGGAATTTGAAGTATTTATTGGGGGCCTAGACAAGGATGCTACTGAGGATGATCTGAGGAAGCTTTTTGGTGAATTTGGGGTAATTACTGAAGTTAGGTTGATGCTCAATCCTCAGACTAAAAAGAACAGAGGATTTGCATTCTTGCATTTTGAAACCGTTGAACAAGCGAAAAGAGCTGTGGCAGAGCTCAAAAATCCTGTGATTAATGGCAAACAATGTGGTGTGTCTCCTGTTCAGGACAATGATACCCTATATTTGGGTAACATATGCAAGACATGGAAAAAGGAAGCTCTAAAGGATAAGTTGAAGCATTATGGAGTTGAAAATTTTGAGAAGTTGACTTTAGTAGAAGATATTAACAATGAGGGAATGAACCGTGGATTTGCATTTTTGGAATTTTCATCTCGATATGAGGCTAAGAAAGTGTATAAGCAACTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAAGGCAGCTGAAGTTTCCTTTACAAACTCCTTTATTGAACCAGTTGATGAGATTATGGCACAGGTTAAAACTGTATTTATAGATTCACTGCCTCCTTCATGGGATGAAGATTATGTCCGGGATCTTCTTAAGAAATATGGGGAGATTGAAAAGATTGAGCTTGCCAGGAACATGCCAGCTGCCCGCAGGAAGAATTTTGGATTTGTTACATTTGGTACGCATGCTGCTGCCGTGGAATGTGCTGATAGCATTACCAGTAGAGGGTTAGGTGAAGGTGACAAGAAGGCAAAAGTTAGGGCTAGATTGTCAAGACCTCTTCAGAAAGGCAGTAGAAAACATGTTAGCCATGGTGCCCACCGATCTGGTCACAAATCTGGAAGATTAACAAGGCCTTCATGGAGTCGACCTGCTCCACGCAGTCTTCCTGCCCGCATGGTAAAACGAACTGAAAGTCGTGTTCCACCAGTTAAGCCTGTTAGGGCGAGAGATAGGCGTCCTGCTTTGTCGATGTCGGTGAGAGCAAGGCCAATGGCTCATTCAGCTAGATCCTCTGACAAGAGATCAACTGCACCCGGATATTCCAAAAGTAGCATGAAGAGAGACTATGGTCGACGTGAGGATCTACCACCTCCAAGAAGTCGATTCTCTGTAGATTATGGCTCTAGGGTGGCCTCTCAAAGACACCCTTCTTACAGGGATTATCCAGCCCTTGGCTCTGGCTACACTGACCTGCGTAAAAGTACATCTCGTGCTGCAGCAGCTGCACCAAGGAGAGGTTATCTGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCTTCCTCCTTCCCATCTAAGTGACCGTGAAATACGCTCCCATGATTATGGCACTCTGTCGGGTTCAAAACGTCCTTATGCTGTCATAGATGATGTTGCTCCACGATATCCAGATACTGGTGCTCGCCAATCAAGATCACGTTTGGACTATGAGTATGGGGGTAGTACTTCACAGTATGGAGATGCCTATGGAGATAGACTTGGAAGATCTAGTCTGGGATATACTGGCAGTAGAAGTTCAATTTCTACACAAGACTCACACGGGATGTATAGCAGTCGACAGAGCATGAGTCATAGCAGAGGTTATTTTGGTGGTAGTGATGGTGGTTTGTACTCATCAAGTTATGGTGCTGATTACATATCTCGTGGAAGTGATGTTGGTGGCAGATCATATTCATCGATATATTCTGGCAGGGGTGTGGGTTCTAGCAACAGCTATATGGCTGGCAGTAGATCTGGGTCTCATTATTGA 2304 0.4431 MPPKTVKRGAAAKRAKAALESNNNQQLEPEAAEAAVNHQEEEEENAANEEKSVVVEEGKPDDVKDNEEEVKESTDEYEKDEHLDFEDNYPEYEPLEYGGDDYGENENEQDEGQDVGDEVEEEQEENVGEEEGDTGEEEVEYIYEEVEIDEDDEHADEEHEPAQIADVEEEKHSEVVKERQKQKEFEVFIGGLDKDATEDDLRKLFGEFGVITEVRLMLNPQTKKNRGFAFLHFETVEQAKRAVAELKNPVINGKQCGVSPVQDNDTLYLGNICKTWKKEALKDKLKHYGVENFEKLTLVEDINNEGMNRGFAFLEFSSRYEAKKVYKQLQKRDVVFGVDKAAEVSFTNSFIEPVDEIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNFGFVTFGTHAAAVECADSITSRGLGEGDKKAKVRARLSRPLQKGSRKHVSHGAHRSGHKSGRLTRPSWSRPAPRSLPARMVKRTESRVPPVKPVRARDRRPALSMSVRARPMAHSARSSDKRSTAPGYSKSSMKRDYGRREDLPPPRSRFSVDYGSRVASQRHPSYRDYPALGSGYTDLRKSTSRAAAAAPRRGYLDDGYGQRFERPLPPSHLSDREIRSHDYGTLSGSKRPYAVIDDVAPRYPDTGARQSRSRLDYEYGGSTSQYGDAYGDRLGRSSLGYTGSRSSISTQDSHGMYSSRQSMSHSRGYFGGSDGGLYSSSYGADYISRGSDVGGRSYSSIYSGRGVGSSNSYMAGSRSGSHY* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0082 767 CDD RRM_SF 267 334 - -
Dod01g0082 767 Gene3D - 123 260 IPR012677 -
Dod01g0082 767 CDD RRM_SF 364 438 - -
Dod01g0082 767 SUPERFAMILY RNA-binding domain, RBD 355 462 IPR035979 GO:0003676
Dod01g0082 767 MobiDBLite consensus disorder prediction 90 138 - -
Dod01g0082 767 MobiDBLite consensus disorder prediction 34 67 - -
Dod01g0082 767 Gene3D - 264 348 IPR012677 -
Dod01g0082 767 Coils Coil 105 125 - -
Dod01g0082 767 PANTHER RNA RECOGNITION MOTIF 1 767 - -
Dod01g0082 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 349 IPR000504 GO:0003723
Dod01g0082 767 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 767 - -
Dod01g0082 767 MobiDBLite consensus disorder prediction 613 628 - -
Dod01g0082 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 255 IPR000504 GO:0003723
Dod01g0082 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 333 IPR000504 GO:0003723
Dod01g0082 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 364 422 IPR000504 GO:0003723
Dod01g0082 767 MobiDBLite consensus disorder prediction 1 138 - -
Dod01g0082 767 SMART rrm1_1 186 259 IPR000504 GO:0003723
Dod01g0082 767 SMART rrm1_1 363 438 IPR000504 GO:0003723
Dod01g0082 767 SMART rrm1_1 266 345 IPR000504 GO:0003723
Dod01g0082 767 MobiDBLite consensus disorder prediction 440 465 - -
Dod01g0082 767 Coils Coil 63 83 - -
Dod01g0082 767 MobiDBLite consensus disorder prediction 489 508 - -
Dod01g0082 767 MobiDBLite consensus disorder prediction 537 551 - -
Dod01g0082 767 Coils Coil 31 51 - -
Dod01g0082 767 MobiDBLite consensus disorder prediction 75 89 - -
Dod01g0082 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 263 IPR000504 GO:0003723
Dod01g0082 767 SUPERFAMILY RNA-binding domain, RBD 186 332 IPR035979 GO:0003676
Dod01g0082 767 MobiDBLite consensus disorder prediction 685 708 - -
Dod01g0082 767 MobiDBLite consensus disorder prediction 427 630 - -
Dod01g0082 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 362 444 IPR000504 GO:0003723
Dod01g0082 767 Gene3D - 352 471 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0082 Dod-Chr1 1481723 1487608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0082 187 443 Eukaryotic Initiation Factors Gene Family AT1G49760 22.945 5.76e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0082 - - gmx:100811387 968.378