Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0040 ATGGATTCAGAATTTGCAGATCTGGAATCTGTTCAACAATACCTTCTTGGACACGATTCCAATGACCTGATAGATCTTGATCAGGACCCCAACACCCACCAATCTGCATCTCACAACCCTTTACCAAACCCTAAACGTGAAAACATTTCGGATAACATAGTGTCTCCGGGGGAGCATGCGGTGGCACGTGAAGTGCACGCGGCTCCCACATGGAAGCATTATAGGGGAGTGAGGCGTAGGCCGTGGGGAAAGTTCGCCGCGGAGATAAGGGACCCCGAGAAGAATGGAGCTAGAGTGTGGCTTGGGACTTATGAAACTGAGGAACAAGCAGCTTTTGCTTATGACAAAGCTGCATTCAAAATGCGTGGTCAAAAAGCCAAGCTAAATTTCCCTCATCTCATTGGCTCGGCTGAGCCATTGGAGCCGGTGAGGGCGGCGGCGGCTTCTGAACGAAGTTTGCCGGAGCCTTCATCGCCTTCTTCTGAGGATAGTTCAGAGTCACTAGGGACAAAGAAAAGGAGGAATTTGGCTGACCTGTTGAATAAATTAGCCAAGAATAGATGCCAAGCCAAACTAGTTGAATTGGCCTCAGAAAAATGA 600 0.4883 MDSEFADLESVQQYLLGHDSNDLIDLDQDPNTHQSASHNPLPNPKRENISDNIVSPGEHAVAREVHAAPTWKHYRGVRRRPWGKFAAEIRDPEKNGARVWLGTYETEEQAAFAYDKAAFKMRGQKAKLNFPHLIGSAEPLEPVRAAAASERSLPEPSSPSSEDSSESLGTKKRRNLADLLNKLAKNRCQAKLVELASEK* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0040 199 MobiDBLite consensus disorder prediction 27 50 - -
Dod01g0040 199 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 2 189 - -
Dod01g0040 199 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Dod01g0040 199 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Dod01g0040 199 PRINTS Ethylene responsive element binding protein signature 113 133 IPR001471 GO:0003700|GO:0006355
Dod01g0040 199 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Dod01g0040 199 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Dod01g0040 199 Gene3D AP2/ERF domain 72 132 IPR036955 GO:0003700|GO:0006355
Dod01g0040 199 MobiDBLite consensus disorder prediction 19 51 - -
Dod01g0040 199 MobiDBLite consensus disorder prediction 141 172 - -
Dod01g0040 199 PANTHER DNA-BINDING DOMAIN 2 189 IPR044808 GO:0003700|GO:0009873
Dod01g0040 199 CDD AP2 72 133 IPR001471 GO:0003700|GO:0006355
Dod01g0040 199 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0040 Dod-Chr1 470200 470799 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0040 40 157 AP2-EREBP Transcription Factor Family AT2G44840 60.169 4.70e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod01g0040 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0040 K09286 - gmx:548037 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0040 01 470200 470799 Dod01g0040 01 470200 470799 ECH