Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0038 ATGGATTCCGAGCATGCATACTTGGAATATCTTCAGGGATTCCTGCTTGGCAATGAGTCAAGCATTCCGTTGAATGACTCAGACCTCAAAATGGATTACTCTGAGTCATATCAAGCTGTTCCAAACCCTAGTTGTGGCAGTAATTCAAATACAGCTTCTCAAGGTGGGAGTTTTATTGCCATGGCAGGGCATGAAGTCCACACGCCTCCAACATGGAAACGCTATAGGGGCGTGAGGCGTAGGCCATGGGGGAAGTTTGCAGCAGAAATCAGGGATCCTAAGAAGAATGGTGCTAGGGTTTGGCTTGGAACTTATGAGACGGAAGAGCAAGCGGCTTTAGCTTATGACAAAGCAGCTTTCAAGATGCGCGGTCGAAAAGCCAAGCTAAATTTTCCTCACCTCATTGGCTCAGATGAGCAATCTGAGCCAATGAAGGTAGTCGCTATGAAGCGAAGCTCACCAGAACCTTCTTCGCCTTCATTGGAGGATGGTTCAAACTCACGAGGATCAAAGAGGAGGAGAAACTTAGCTGATCTATTGAATAAGTTAGCTAAGAATAGAGGCCAAGCTACGGTGGTCAAAATCGACCCAAATGCAAATGTTGCTGATCAATGGTTGAATGATGACTTCAATGTCATTGCAGTCTAA 648 0.4568 MDSEHAYLEYLQGFLLGNESSIPLNDSDLKMDYSESYQAVPNPSCGSNSNTASQGGSFIAMAGHEVHTPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEQAALAYDKAAFKMRGRKAKLNFPHLIGSDEQSEPMKVVAMKRSSPEPSSPSLEDGSNSRGSKRRRNLADLLNKLAKNRGQATVVKIDPNANVADQWLNDDFNVIAV* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0038 215 MobiDBLite consensus disorder prediction 140 173 - -
Dod01g0038 215 SUPERFAMILY DNA-binding domain 74 133 IPR016177 GO:0003677
Dod01g0038 215 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Dod01g0038 215 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Dod01g0038 215 PANTHER DNA-BINDING DOMAIN 2 189 IPR044808 GO:0003700|GO:0009873
Dod01g0038 215 CDD AP2 73 134 IPR001471 GO:0003700|GO:0006355
Dod01g0038 215 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Dod01g0038 215 PRINTS Ethylene responsive element binding protein signature 114 134 IPR001471 GO:0003700|GO:0006355
Dod01g0038 215 Gene3D AP2/ERF domain 73 133 IPR036955 GO:0003700|GO:0006355
Dod01g0038 215 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 2 189 - -
Dod01g0038 215 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0038 Dod-Chr1 445533 446180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0038 74 157 AP2-EREBP Transcription Factor Family AT2G44840 76.190 2.44e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g0038 AP2 3.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0038 K09286 - gmx:102663872 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0038 01 445533 446180 Dod01g0038 01 445533 446180 ECH