Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0023 ATGAGTCGAAGAGTGAGGAGGAGGGTGGCAAGGAAAGGCAAAGGGAATGTGGTGTTGTCAAGTTGCCCTGATATTCAAGATGAGGTTTTGGATTTGGAACAACAAGGGACTGTGGATTGGAGGAGCTTACCTGATGATACAGTGATTCAGCTGTTGTCATGTCTGAGTTATAGGGATCGAGCTAGCTTATCGTCGACTTGTAGGACATGGAGGACTCTTGGAAGCTCGCCATGCTTGTGGACATCGCTGGATCTTCGCTCCCATCGGTTTGATGCCACCATGGCATCCTCGCTTGCTCCCAGGTGTGTGCATCTTCAGAAGCTGAGGTTTCGCGGAGCGGAGTCTGCTGATGCGATAATCCATCTTCAAGCTAGGAACTTGCGTGAGATAAGTGGTGACTATTGCAGGAAGATTACTGATGCGACTCTTGCGGTGATTGCTGCTCGACATGAGTTGCTCGAGAGTCTTCAGCTTGGACCAGATTTCTGTGAGAGAATTAGTAGTGATGCTATCAAAGCAATAGCTCATTGCTGTCCTAGATTGAGTAAACTTAGACTCTCGGGCATCAGGGATGTGAATGCGGATGCTATTAATGCATTGGCTAAGCATTGTCAGAAATTGACTGATATTGGGTTTATTGACTGTCTGAATGTTGATGAACCTGCATTGGGGAATGTGGCATCAGTTTGTTTCCTTTCTGTCGCGGGCACATCAAGTATGAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAGCTACCTAACCTGATTGGATTAGATGTTTCAAGAACTGATATCAGTCCATCTGCTGTTGCGAGATTGTTATCCTTATCACAGAGCTTGAGGGTTTTGTGTGCTTTGAATTGTCCCATCCTTGAAGAAGACACTAGCTTCTCTGCCAATAAATATAAAAACAAGTTATTAGTTTCCCTTTTTACCGATATTTTTAAAGGACTAGCTTCTTTATTTTTTGACAATACAAAGAAACGAAAGAATGTGTTTTTGGACTGGAAAACTTTGAAGAATAATGATAAGGACCTTAATGAAATTATACCCTGGCTTGAATGGATGCTATCCCATACGCTTCTGCGATCTGCTGAGAGCCCTCAACAGGGTCTTGATAATTTCTGGGTTGAACAAGGTGAAGCGCTCTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAAGAGAGGGCAGCCACGGGCCTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGTGGCATACGCCTCCTTCTTGGCTTAGCAAAATCTTGGAGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCCATTGCGAATTTGTCAGTCAATGCGAATGTGGCCAAAGCTGTTGCAGAAGAGGGTGGGATTGAGATTCTTGCTGGTTTGGCTAGGTCAATGAACAAGCTGGTGGCTGAAGAGGCTGCTGGAGGATTGTGGAATCTATCTGTTGGAGAAGAGCACAAGGGTGCCATTGCTGAAGCTGGTGGAATAAAAGCTTTAGTGGATCTTATATTCGAGTGGTCCTCTAGTGGAGATGGAGTTTTGGAACGTGCAGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCGCTGGCAGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCCAATTTAGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCCGTTGGGCAAGAAGCAGGTGCTCTTGAGGCACTTGTTCAGCTTACACGATCTCCCCATGAGGGTGTTAGGCAAGAAGCTGCAGGTGCCCTTTGGAATTTGTCATTTGATGATAGAAATAGAGAGGCCATTGCAGCAGCTGGTGGAGTTCAGGCCTTGGTAATTTTTGTACTATGTTTACTTAACCTTTTTCTAGGAAATAGAAAAAGAAATATTGTTAAAGCGGGAATAAGAAAGGTATAA 2022 0.451 MSRRVRRRVARKGKGNVVLSSCPDIQDEVLDLEQQGTVDWRSLPDDTVIQLLSCLSYRDRASLSSTCRTWRTLGSSPCLWTSLDLRSHRFDATMASSLAPRCVHLQKLRFRGAESADAIIHLQARNLREISGDYCRKITDATLAVIAARHELLESLQLGPDFCERISSDAIKAIAHCCPRLSKLRLSGIRDVNADAINALAKHCQKLTDIGFIDCLNVDEPALGNVASVCFLSVAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDISPSAVARLLSLSQSLRVLCALNCPILEEDTSFSANKYKNKLLVSLFTDIFKGLASLFFDNTKKRKNVFLDWKTLKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGEALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIKALVDLIFEWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVIFVLCLLNLFLGNRKRNIVKAGIRKV* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0023 673 SUPERFAMILY RNI-like 54 293 - -
Dod01g0023 673 SMART arm_5 589 629 IPR000225 GO:0005515
Dod01g0023 673 SMART arm_5 458 498 IPR000225 GO:0005515
Dod01g0023 673 SMART arm_5 499 542 IPR000225 GO:0005515
Dod01g0023 673 SMART arm_5 417 457 IPR000225 GO:0005515
Dod01g0023 673 SMART arm_5 543 584 IPR000225 GO:0005515
Dod01g0023 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Dod01g0023 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Dod01g0023 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 555 IPR000225 GO:0005515
Dod01g0023 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Dod01g0023 673 Pfam Armadillo/beta-catenin-like repeat 422 456 IPR000225 GO:0005515
Dod01g0023 673 Pfam Armadillo/beta-catenin-like repeat 500 542 IPR000225 GO:0005515
Dod01g0023 673 Pfam Armadillo/beta-catenin-like repeat 463 497 IPR000225 GO:0005515
Dod01g0023 673 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Dod01g0023 673 Pfam Armadillo/beta-catenin-like repeat 553 584 IPR000225 GO:0005515
Dod01g0023 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 585 IPR000225 GO:0005515
Dod01g0023 673 Gene3D Ribonuclease Inhibitor 32 322 IPR032675 -
Dod01g0023 673 SMART fbox_2 43 83 IPR001810 GO:0005515
Dod01g0023 673 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Dod01g0023 673 PANTHER PROTEIN ARABIDILLO 1 1 650 - -
Dod01g0023 673 Pfam F-box-like 40 86 IPR001810 GO:0005515
Dod01g0023 673 Gene3D - 360 480 IPR011989 -
Dod01g0023 673 PANTHER PROTEIN ARABIDILLO 1 1 650 IPR044583 -
Dod01g0023 673 SUPERFAMILY ARM repeat 365 649 IPR016024 -
Dod01g0023 673 Gene3D - 481 661 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0023 419 650 U-box Gene Family AT5G67340 30.204 2.56e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0023 - - gmx:100819086 1120.92