Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0005 ATGGGTGAGAAAGAAGATGTGTTGGGGTTGAGTTTGAGTTTGAGCTTGGGAGGATGTGGAGTGAACCAATCTCCTCTTCCTGCCTTGAAGGTGAATCACATGCAGAAGCCCCCGCAGCGACAACATTCGGCTGCTATGAATAACAAGAGTTCCTGGAATGACTTGTTTCGGTTACCACCTGATAGGAGCTCCGATACGAGATCGTTTCTTGGAGGAATCGACATGAATTCCGAGCCGCTAGCGGTGGCGGAGCCGGTGCCGGATTTCGACGACGACAACGGCGATAACAGCACGGTATCCAGCGGCAGCAAGCGGAGCGAGAGAGAAGAGGATAATGCCGGCGGCGCCGCCGTGTGCTCGCCGGGGAGCGACGACGAGGACGGTGGCGGCTGCGACACGCCGAGGAAGAAGCTGAGGCTGACGAAGGAACAGTCCATGTTGTTGGAAGAAACGTTCAAGCAGCATAACACGCTGAACCCGAAACAAAAGCAAGCATTGGCAAAGGAGTTGAATCTTAGGCCCAGACAAGTGGAGGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAGACAGAAGTGGATTGTGAATACTTGAAGAGATGCTGTGAGAATCTAACTGAAGAGAATAGGAGGTTGCACAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAGCTCTACATGCATATGAACCCTCCTACCACTCTTACAATGTGCCCTTCGTGCGAGCGTGTTGCCACCTCATCTGCATCATCCTCGTTTGCCACTGCTCACTTGGCGGCGCCGCCGAGTAATTGTGGCAACCTGTTGGGTACGAACATCCGGAAGCCGGTGCCTGTCAAGCCTTGGCCATTGGAAGGCTCAATTTCTCGGCCTTAA 891 0.5286 MGEKEDVLGLSLSLSLGGCGVNQSPLPALKVNHMQKPPQRQHSAAMNNKSSWNDLFRLPPDRSSDTRSFLGGIDMNSEPLAVAEPVPDFDDDNGDNSTVSSGSKRSEREEDNAGGAAVCSPGSDDEDGGGCDTPRKKLRLTKEQSMLLEETFKQHNTLNPKQKQALAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLHKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVATSSASSSFATAHLAAPPSNCGNLLGTNIRKPVPVKPWPLEGSISRP* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0005 296 CDD bZIP 184 223 - -
Dod01g0005 296 MobiDBLite consensus disorder prediction 34 135 - -
Dod01g0005 296 Pfam Homeodomain 135 189 IPR001356 GO:0003677
Dod01g0005 296 Pfam HD-ZIP protein N terminus 1 109 IPR006712 GO:0005634
Dod01g0005 296 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981|GO:0006355
Dod01g0005 296 CDD homeodomain 134 192 IPR001356 GO:0003677
Dod01g0005 296 Pfam Homeobox associated leucine zipper 191 225 IPR003106 GO:0006355|GO:0043565
Dod01g0005 296 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Dod01g0005 296 Coils Coil 204 224 - -
Dod01g0005 296 SMART HOX_1 133 195 IPR001356 GO:0003677
Dod01g0005 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 6 288 - -
Dod01g0005 296 MobiDBLite consensus disorder prediction 36 54 - -
Dod01g0005 296 PANTHER - 6 288 - -
Dod01g0005 296 SMART halz 191 234 IPR003106 GO:0006355|GO:0043565
Dod01g0005 296 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
Dod01g0005 296 SUPERFAMILY Homeodomain-like 120 192 IPR009057 -
Dod01g0005 296 Gene3D - 139 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0005 Dod-Chr1 55020 58375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0005 32 248 Homeobox Transcription Factor Family AT3G60390 61.667 1.03e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod01g0005 HD-ZIP_N 6.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0005 K09338 - gmx:100819624 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0005 01 55020 58375 Dod01g0005 01 55020 58375 ECH
Dod07g2195 07 53443039 53447643 Dod01g0005 01 55020 58375 PCT