Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1958 ATGCGAACTTCATGGGCAGATTTGGCTGCGAATTCTGCAGCTGAAAATGTAGGCCCCGGTTCTTCTGCCAGCAATGTGGGAACTGGTTATAATTCAGCTCCTTCTCGAACAGCATATGTTCCTCCGCATCTTAGGAACCGTCCACCTCCTGCAGAGTCTCCTGCTCCTGCAAGTAGTGGCCCATCTTCTGGTTATGGTACTGGTAATACTGGATCACGTTGGGCTGCTCCCAAAAATGAGTATCATTCAGGATATGGCAGCAACAGCCGCAAAAGTGGATGGGGAAACAGAAGTGGTGGCTGGGATCGTGGCAGGGAACGTGAAGTTAATCCCTTTGGAGATGAGGATGATGCAGAACAGGCATTTAGTGAGCAGGAGAATACAGGAATAAACTTTGATGCATATGAAGACATTCCAGTTGAGACCAGTGGTGAAAACGTGCCACCGCCTGTGAATACATTTGCTGAGATTGACCTAGGGGAAGCACTTAATCAGAATATAAGGAGGTGCAAATATGTGAAGCCAACACCTGTTCAACGATATGCCATACCAATATCCCTTGCTGGTCGGGATCTGATGGCTTGTGCTCAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCCATAATCAGTGGAATTATGAGGGGGCAACCTGTACAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCACTAGCCCTTGTTCTCTCACCAACTAGGGAGCTATCTATGCAAATACATGAAGAAGCTAGGAAGTTTGCATACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGCGCACCAATAAACCAGCAGCTACGGGATCTTGAGAGAGGGGTTGACATTCTCGTGGCAACTCCTGGAAGATTGGTAGATTTGCTTGAGAGGGCTAGGGTTTCATTGCAGATGATCAGATATTTGGCCCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGGAAGATTGTTGAACAAATGGACATGCCTCCACCTGGTGTAAGGCAGACTATGCTATTTAGTGCTACTTTTCCAAAAGAGATACAGAGATTGGCCTCTGATTTTCTTTCGAACTATGTTTTCCTGGCTGTTGGAAGAGTGGGCTCGAGTACTGATTTAATTATTCAAAGAGTTGAGTATGTTCAGGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCTCAAAGGGCAAATGGTGTTCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAAAAGGGTGCTGATTCGCTGGAACACTGGTTGTGCATGAATGGTTTTCCTGCAACTACTATTCATGGTGACAGGACACAACAGGAAAGAGAACTGGCATTGCGGTCTTTTAAAAGTGGCAACACTCCTATATTGGTTGCCACTGATGTGGCTGCACGCGGTCTTGATATTCCCCATGTTTCCCATGTGATCAACTTTGATCTGCCAAATGATATTGATGATTATGTTCATCGTATTGGAAGGACGGGGCGAGCAGGAAAGAAAGGTCTGGCTACTGCATTCTTTAATGAAAACAATGCATCGCTGGCAAGGGCTTTAGCAGATCTGATGCAAGAAGCAAATCAGGAAGTACCTGCTTGGCTGTCACAGTTTGCTGTTCGATCTTCTTTTGGTGGAAGGAACCGTCGATCAGGAGGCCGGTTTGGTGGCCGTGATTTTCGAAGAGAGGGTTCTTTCAGTAGGGGTGGTTCTGATTACTACAGTTCAGGAAACAGCAGCGGTGGCTACGGGGCTTCTGGTGGGTATGCTGGAGGATATGGCCCTGGGGTCACCAGCGCATGGGACTGA 1830 0.4721 MRTSWADLAANSAAENVGPGSSASNVGTGYNSAPSRTAYVPPHLRNRPPPAESPAPASSGPSSGYGTGNTGSRWAAPKNEYHSGYGSNSRKSGWGNRSGGWDRGREREVNPFGDEDDAEQAFSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFAYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIIQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVSHVINFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNASLARALADLMQEANQEVPAWLSQFAVRSSFGGRNRRSGGRFGGRDFRREGSFSRGGSDYYSSGNSSGGYGASGGYAGGYGPGVTSAWD 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1958 609 Gene3D - 371 550 IPR027417 -
Dere14g1958 609 Pfam DEAD/DEAH box helicase 176 357 IPR011545 GO:0003676|GO:0005524
Dere14g1958 609 MobiDBLite consensus disorder prediction 1 118 - -
Dere14g1958 609 FunFam Probable ATP-dependent RNA helicase DDX4 114 370 - -
Dere14g1958 609 MobiDBLite consensus disorder prediction 57 95 - -
Dere14g1958 609 SMART ultradead3 171 383 IPR014001 -
Dere14g1958 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 368 IPR014001 -
Dere14g1958 609 SMART helicmild6 426 507 IPR001650 -
Dere14g1958 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 525 IPR027417 -
Dere14g1958 609 CDD DEADc_DDX3_DDX4 153 374 IPR044763 GO:0003724|GO:0005524
Dere14g1958 609 CDD SF2_C_DEAD 380 516 - -
Dere14g1958 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 546 IPR001650 -
Dere14g1958 609 Pfam Helicase conserved C-terminal domain 392 507 IPR001650 -
Dere14g1958 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Dere14g1958 609 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 122 546 - -
Dere14g1958 609 MobiDBLite consensus disorder prediction 100 114 - -
Dere14g1958 609 MobiDBLite consensus disorder prediction 1 35 - -
Dere14g1958 609 Gene3D - 108 370 IPR027417 -
Dere14g1958 609 FunFam ATP-dependent RNA helicase RhlB 371 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1958 Dere-ChrDere14 25404942 25416047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1958 150 539 Eukaryotic Initiation Factors Gene Family AT3G19760 32.992 1.06e-63 213