Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1860 ATGGCTTCTTCTTTGGAGAAACTCCTGGCAGAGGAAGGTTTCAAGGGAAGCAGAAGAATTATAAGGTCAAGATCCTCCTTGCAGACTAATACTGAAACTATGACCCATTACTTCAGAGACCAAGAAAAGAGACTTTCAGTGTCAGATCAAAGAATTAAAAGGGAGAGAATAAAATCCAATGTCTCACAATTTTGGAATAAAAGTGAATTTTTGAATAGAGATACTGCTCAGAGCAGGAGACCAAGGGATAATCTTATTGAAAGAGAGAAATTGGATGAAGCATTGAAGAATGAAAATGAGGACAAATCTTCCAGAAATGCAGAGGTAAATAAAGAATCTGATATCAAAACATCAGAACCGATGCCTAGAAATGATCTAGTTGAGGTGGGAGAGGATGAAGATAACAGAGTTAAAGATGTATATTCCAATGAGGCATTCAATGCAAAAAAAGGGAAAGAAAAGCATTGCAATGACTTTACGAATAGGGAGATATGCCATGGGATGCTAGTCAAGGATGCAAAGTTGGATAAGAGTCATGGCAGTACTTCCAATAAAAATATGCTTGGAAAGTTTAATGGAAATACAAGGAAGGATATAAAGCACCAGGAGAGATCGTATAATAAATCAAATAGTAAAAGCTTTGAAGATAGTTATGATAAAAATCATAATCTTGTGATGCAGACCCCTGTTGATTTAGCTCTTGATAAAGTTGCTGTTCGAGCAGTGGTTTCTATTCTAAATGGACATATAAAACGCTTTCTAAAAGATGAAGAATTTCGGACTACACTGCGTCACAATTGTTTCTCCGCCTTAAATTTCATTGAACTGGAAGATGAGAACAGTACTGAGACCAAAGTCATAAGAAGTCTTGAACAAGCAATTGATACAATAGACCAAACTGCTGAGGAATCTGTGTCTGAGAAAGAATTGAAAAGAACCTCTTTGCAACTAAGCATTATTACAGGTCTAAGTTTAAATGATTTGAAGTATGGGTTTACTTGTGGGATTCCCAATTATAAGTTGTCAGCCTGTGCTCATCTTTACCTCGGTGTGGTATATAAGATACAGAGAAAGGATAAGGTATCAGCAAAGCATATTTTGCAAGTATTTTGTGATTCACCTTCTCAGGCACGGACAACATTGTTGCCTGAACTTTGGGAGTACTTATTTTCTCCACATTTTTCTCATTTGAAGGCATGGTATAGGAGGGAAGTTGAAACACTAGCAGATATGCCAAGCAGAACAAGAAAACTGAAACATCTTGAAAAAGTGTATATTGAGCATTTGGATTCTGGGACTTACTCATTTGCTGTATACTACAAAGACTGGCTCACAGATGGAGCAGAAGCTCCATCGGTTCCTTCTATCAGCATTCCATCAATATCTGCGATGGAAAGTCAGCATGGAAGTTCCCTTGGTCATTCTTCAGAGTTTGCTACCTCCATTGACTCATTCTCACCACAACCAATGGTCAGCAAAAAACTTTATGATTCTGTCTTTGGTAGCTTGAGTGAAGCTGGATTGGATGAAGAGGAAGACAATGCAGTGGATGATAACCTAGATAATTGCATGAAACACACATATGGTTCAGCTATTGTTAAACAAAAATTAACATATGTCTCTGAAATGGTTAAATTTACGGATCAAGATGTTGAAGAAGATTTTAAGAAGACTATGCCCATTTTTGCATTCAATTCTAAAGGAACCTCAGTGATAGCTGAAGAAGAATGGAGAGAAGGAAGTCTCAGTAATGATACTGGTAACTCTTTCATTACAAGTGTAAAAAGCAACATGCTAGATGCTCTACTGCATAATAATGCTATTGAACTCACTCATAGAGAGGTGACAGGATGTGTTTTGGAAAGGCATGATGCCAAAAGCTTTTTGAATCCCATTGTTTCAACTGTTTCACTCTCCGGCGAGGAATCAGTTTCCAATTCTGTTGTAAATCCAACAAAGATGAGCTATCCTTCAAAAGGGTTATATTTTCGAAGCATTCCACAGGAATTCATTTGTCCTCTGACTGGAACTCTGTTTGAAGAACCAACTACCCTAGAGACCGGTCAAACCTTTGAACGAGCAGCCATTAAGGTATGGTTTGAAAAGGGAAACAGAACTTGCCCTGTATCAGGAAACAGTTTAGATTGTGTAGCCGTGCCATTAACCAACCTTATTTTGAAGCGTTTGATTGGTAATTGGAAGTCAGAACAATTTCGTCGCCTTTTGGATCTCACTTCTCAAATAGTGGAAAACTCAGGAAGCCATGTGCTGAAACATGATGAGGCTGCTGTTTATAATTTAGATAGTCTTTTATCTTCTTTGAATGAAGAGGACAAAACAACTTATGCCAAACAACTAATCTCTTTAGGGCTTCTGTCATTTCTTTTTAAGAGGTTTGAATTAGGAAATTTGCAAGAGAAAACAAATGTGTTGGTACTCTTGTTAAATTGCATTGAAGCAGATGCTGGTTGCATATATCAGATAGCAAGGAAAATTGACAAAAAATGTCTTCTAGAGCTTCTTCTCAGCCAGGAGATTGCCCCAAGAACGAATGCAATATCATTACTTACTGAACTTTATTCTCTTAAAAGAAATGATGTTTTTTCAATCTTAGGTGGCTTCACTGATGCGGATGTATTTAACACAATGAATGTTCTACTGTTGTATCTTAAGAATTCTCCCCCACATGAAAGCCCCCATGTTGCTGTTCTTTTGTTACACTTTGATTTACTGGACAAGTTTTCACAGAAGATTGAGCCTCGAAAGTATAGCATATACAGAGAGGAGGCTGTGAATGCCATTGCAGTAGCTCTTGATGCCAGCTTATGTGATGAGAAGGTCCGGGAAAAGTGTTGCAGAGCATTGTTGATCTTGGAAGGACTTTTTTCTTTTACTGGAATAAAACTAGCAAAGACTAGCATCTTAAAGAAAACAGATGATGATAATGATTGTTCAGAATTGAAAGCTTCAGAGCATGATGGAGAGAATTTAATGTCATTGGAAGATGAAGAAGAAAAGATCCAAGAGTGGTTGCTGAACCTGTTAGAATTGTTGGTTGGTGATGGAGAAAGCCCATTTTTGAAGAACATTTCAAGATGTTTAGACTCTAGACACCGAGATTTGGTGAGAGTGTGCTTATTAACAGTTACATGGTTGAGCTCCTCACTTTCTATACTATGTACTGCTGGATTGCATCTTCCTGCGTTCTCAGCCGTCATCGATCAGATAAAAGGAATCCTGCAAAATGGCGAGCTTGAGCTCAAGACTCTTGCTTCTTTGTCCTTGTTTAATTTCAGTAAAATATCAGAATGCAGAAATCTTTTGATGACTATTGCAGGAGATATTGCTGCTCCTCTTCATGGACTTGTTGATGTAACATGGACTGCAAAGCAGCTGCTTGCTGCTGTGTCTGGGGAGGATTTGTAA 3426 0.3795 MASSLEKLLAEEGFKGSRRIIRSRSSLQTNTETMTHYFRDQEKRLSVSDQRIKRERIKSNVSQFWNKSEFLNRDTAQSRRPRDNLIEREKLDEALKNENEDKSSRNAEVNKESDIKTSEPMPRNDLVEVGEDEDNRVKDVYSNEAFNAKKGKEKHCNDFTNREICHGMLVKDAKLDKSHGSTSNKNMLGKFNGNTRKDIKHQERSYNKSNSKSFEDSYDKNHNLVMQTPVDLALDKVAVRAVVSILNGHIKRFLKDEEFRTTLRHNCFSALNFIELEDENSTETKVIRSLEQAIDTIDQTAEESVSEKELKRTSLQLSIITGLSLNDLKYGFTCGIPNYKLSACAHLYLGVVYKIQRKDKVSAKHILQVFCDSPSQARTTLLPELWEYLFSPHFSHLKAWYRREVETLADMPSRTRKLKHLEKVYIEHLDSGTYSFAVYYKDWLTDGAEAPSVPSISIPSISAMESQHGSSLGHSSEFATSIDSFSPQPMVSKKLYDSVFGSLSEAGLDEEEDNAVDDNLDNCMKHTYGSAIVKQKLTYVSEMVKFTDQDVEEDFKKTMPIFAFNSKGTSVIAEEEWREGSLSNDTGNSFITSVKSNMLDALLHNNAIELTHREVTGCVLERHDAKSFLNPIVSTVSLSGEESVSNSVVNPTKMSYPSKGLYFRSIPQEFICPLTGTLFEEPTTLETGQTFERAAIKVWFEKGNRTCPVSGNSLDCVAVPLTNLILKRLIGNWKSEQFRRLLDLTSQIVENSGSHVLKHDEAAVYNLDSLLSSLNEEDKTTYAKQLISLGLLSFLFKRFELGNLQEKTNVLVLLLNCIEADAGCIYQIARKIDKKCLLELLLSQEIAPRTNAISLLTELYSLKRNDVFSILGGFTDADVFNTMNVLLLYLKNSPPHESPHVAVLLLHFDLLDKFSQKIEPRKYSIYREEAVNAIAVALDASLCDEKVREKCCRALLILEGLFSFTGIKLAKTSILKKTDDDNDCSELKASEHDGENLMSLEDEEEKIQEWLLNLLELLVGDGESPFLKNISRCLDSRHRDLVRVCLLTVTWLSSSLSILCTAGLHLPAFSAVIDQIKGILQNGELELKTLASLSLFNFSKISECRNLLMTIAGDIAAPLHGLVDVTWTAKQLLAAVSGEDL 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1860 1141 MobiDBLite consensus disorder prediction 93 125 - -
Dere14g1860 1141 SUPERFAMILY ARM repeat 766 1101 IPR016024 -
Dere14g1860 1141 CDD RING-Ubox_PUB 667 726 IPR045210 -
Dere14g1860 1141 PANTHER OS04G0584500 PROTEIN 1 1138 - -
Dere14g1860 1141 ProSiteProfiles U-box domain profile. 665 740 IPR003613 GO:0004842|GO:0016567
Dere14g1860 1141 SMART Ubox_2 669 733 IPR003613 GO:0004842|GO:0016567
Dere14g1860 1141 Coils Coil 92 112 - -
Dere14g1860 1141 SUPERFAMILY RING/U-box 654 736 - -
Dere14g1860 1141 Pfam U-box domain 666 736 IPR003613 GO:0004842|GO:0016567
Dere14g1860 1141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 739 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1860 Dere-ChrDere14 23048651 23059007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1860 665 873 U-box Gene Family AT1G23030 27.143 1.23e-12 70.1