LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g1846	ATGCGTCGGTGGTTTTGTTGTACTTGTCATGCAGAGGAGTCTTACCCATCAAATGAAAATGAGCACCTGAAAAGTCCAAGGAATTATGGAGATGATGACCAAAAAGGCTCAAGGATGGCAGCTCCTGTCAAACATGAAACACAAAAGGCAGCACCACCACCTATTGAAGTGCCAGCATTGTCCTTAGAGGAGCTGAAGGAAAAGACTGACAACTTTGGATCAAAGGCGTTGATTGGTGAAGGATCTTATGGAAGAGTGTATTATGCAACCTTAAATAATGGAAAAGTGGTTGCTGTGAAGAAGCTTGATGTTTCATCTGAAGATGAATCAAATGTTGAGTTTTTGACCCAGGTTTCCATGGTCTCAAGATTGAAGCATGAGAATTTTGTTGAGTTGCATGGCTACTGTGTCGAGGGAAATCTGCGTGTACTGGCATATGAGTTTGCTACTATGGGCTCACTTCATGACATATTACATGGTAGAAAGGGAGTTCAAGGTGCACAGCCTGGGCCAACTCTTGACTGGATGCAGCGAGTTAGAATTGCAGTTGCTGCAGCAAAGGGATTGGAATATTTGCATGAGAAAGTTCAACCGCCTATTATACATAGAGATGTCAGATCAAGCAATGTGCTTATCTTTGAAGATTACAAAGCGAAAATAGCTGATTTTAACCTTTCCAATCAGGCCCCTGACATGGCTGCCCGCCTTCATTCTACTCGAGTCTTGGGGACATTTGGTTATCATGCTCCAGAGTATGCAATGACTGGCCAATTGACTCAAAAAAGTGATGTCTACAGTTTTGGTGTTGTTCTTCTTGAGCTTCTCACAGGGAGAAAACCTGTTGATCATACCATGCCTCGCGGACAGCAAAGTCTTGTTACATGGGCTACCCCAAGATTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCAAAATTGAAGGGAGAATATCCTCCAAAAGGAGTTGCTAAGCTGGCAGCCGTTGCAGCGCTGTGTGTGCAGTATGAAGCTGAGTTTAGGCCGAATATGAGCATTGTTGTTAAAGCACTTCAACCACTTCTGAAGCCTCCTGCTCCTGCACCAGAAACTTGA	1092	0.4359	MRRWFCCTCHAEESYPSNENEHLKSPRNYGDDDQKGSRMAAPVKHETQKAAPPPIEVPALSLEELKEKTDNFGSKALIGEGSYGRVYYATLNNGKVVAVKKLDVSSEDESNVEFLTQVSMVSRLKHENFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWMQRVRIAVAAAKGLEYLHEKVQPPIIHRDVRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKPPAPAPET	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g1846	363	SMART	tyrkin_6	72	350	IPR020635	GO:0004713\|GO:0006468
	Dere14g1846	363	Pfam	Protein tyrosine and serine/threonine kinase	77	350	IPR001245	GO:0004672\|GO:0006468
	Dere14g1846	363	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	200	212	IPR008266	GO:0004672\|GO:0006468
	Dere14g1846	363	PANTHER	PTO-INTERACTING PROTEIN 1-LIKE	4	358	-	-
	Dere14g1846	363	MobiDBLite	consensus disorder prediction	16	51	-	-
	Dere14g1846	363	ProSitePatterns	Protein kinases ATP-binding region signature.	78	101	IPR017441	GO:0005524
	Dere14g1846	363	PIRSF	ILK	27	356	-	-
	Dere14g1846	363	Gene3D	Transferase(Phosphotransferase) domain 1	150	357	-	-
	Dere14g1846	363	FunFam	PTI1-like tyrosine-protein kinase 3	150	360	-	-
	Dere14g1846	363	MobiDBLite	consensus disorder prediction	16	42	-	-
	Dere14g1846	363	ProSiteProfiles	Protein kinase domain profile.	72	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere14g1846	363	SUPERFAMILY	Protein kinase-like (PK-like)	51	350	IPR011009	-
	Dere14g1846	363	Gene3D	Phosphorylase Kinase; domain 1	35	148	-	-
	Dere14g1846	363	FunFam	PTI1-like tyrosine-protein kinase 3	33	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g1846	Dere-ChrDere14	22555153	22559629	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g1846	60	355	Receptor kinase-like Gene Family	AT3G58690	48.148	6.13e-91	276

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIII	Dere14g1846		PK_Tyr_Ser-Thr	3.2e-47	CL0016