Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere14g1812 | ATGCTCACAGTACACACCTTCTCTGAATCTTTTCGCTCTCAAATTTTCACACTTTCTCGGGTTATTCCTCCATTCTCTCTCTCATTCAATGCTCTCTTACCCTCTGACTTCTGCTCTGTTTTTCTTCTCTGTTCCTCTCTCACTCATACGCCTTTTTGTTTCTTCACATTTCCTCATCCCCTTGTCTCGTCCAGGGCTTCTCAGACTTTCAATCATCCCCTCTCTCTGTTTCCTGCATTCTCTCATGCTCACACTCAATCTCTCTGTCCTCTTTCTTCTCTGTTCTGCTCCGTGGGAACAGAGGTTCTCTCAATCTTCTGCTCTGTGGCTTCTTCTTCATCATGCTCTTCTCCCCTTCTTCCGGTTCTTCCATCTCTCTTCACTTTATCTGCTATTTCACTTCTGTTTCTCCACACTCTCTCAGCTTTTTCTATCTCACGTCGCTCACTCTCTCACTTTCTGCATCTTCTGTACTCTCAACTTCTCTGCTCTTTAACTCCCCCTCTCGATCTCTCTCCTGTCACTCTCTCCTCTCCCTTTTTTCATCTACTTTTCCGCCATTTCCTGAAGCGTCTTTCTCTACTTTTACTATTGGCGTGGGGAAGTATTCCCCATTTTTGCCGCTTGAGCTTCGTCTTCGGCAATTTACTTACGGTTTCTTCAGATGGAATGGCAGATCTTGCTAGTTATGGGAATCCTGAGCGGGACATTGAGCAAGCACTTGTTGCTTTAAAAAAAGGATCTCAATTACTTAAGTATAATCGGAAAGGGAAGCCAAAATTTCGCCCATTCAGACTCTCACCCGATGCAACAACACTGATCTGGATTTCTCATGGACGGGAAAAGAATCTAAAGTTGTCTTCTGTTTCACGTATTATACCTGGACAGAGGACTGCTGTCTTTAGAAGGCACTTGCGCCCGGAAAAGGATTATTTGTCATTTTCACTTCTTTATAAAAACGGGGAACGATCACTTGATCTGATTTGCAAGGACAAAGCTGAGGCAGAGATATGGTTTGCAGGCCTTAAGGCATTAATTTCAACTGGACAGCATACCCTGCGATCTAAAAGTAACTTATCCGACGATGGTGTTGACTTTTTTCCAATTAGTCGTCCTTTTGGTGCAACATTAGAGTTTACTTCAAGCATTGCACGTGGTAGGGATTCTACTGATTCAGGATCTCGTGAATCTCCATTGCATTGGGCAACATCAGATGTGGCATCAGAACGTGCAAATATGCAACTAAGGACAAGTGCTTCAGATGGCTTTCGTGTCAGTGTGTCAAGTACACCTAGCTGTTCAAGTGGAGGATCTGGACTAGATGACATAGAGTCACTAGGTGACGTTTACATATGGGGAGAGGTTTGGACAGATGGGATTTCACCTGATGGGTTGGGAAGTCAGGTTCCTTCAATGACAGATGTGCTGGTTCCTAAGCCACTAGAATCAAATGTTGTTCTTGATGTTCAGCAGATTGCCTCTGGTGTGCGCCACATTGTTCTAGTTACAAGGCAAGGCGAGGTTTTTTCTTGGGGAGAGGAATTTGGGGGGAGACTTGGTCATGGGATTGATAAAGATTTTTATCGCCCCCAACTTGTTGAGTTCTTGGCTGTTCACAATGTCGAATTTGTTGCATGTGGAGAATATCATTCATGTGCTGTTTCTACATCTGGTGACCTATTTACCTGGGGAGATGGTGCACATAATGCCGGGCTTCTTGGCCATGGAAGTAATGTTAGTCACTGGATACCAAAAAGGGTCACTGGCCCTTTAGAAGGGCTTCAAGTTTTATCTATTGCATGTGGCACGTGGCATTCAGCATTGGCAACATCCAATGGGAAATTGTTTACCTTCGGTGATGGAACATTCGGTGTCTTGGGCCATGGAGATCGCAAGAGTGTGTCATATCCAAAGGAGGTGCAATCATTGAGCGGACTGAAGACTATAAAGGTTGCTTGTGGAGTATGGCATACTGCTGCTATCGTAGAGGTTATGGGTCATCAAGGTTCAAATGTTTCATCCAGGAAGCTCTTCACTTGGGGTGATGGTGACAAATATCGTCTAGGTCATGGAAACAAGGAAACTTACCTTCAACCCACCTGTGTCTCTGCACTTATTGAATATAACTTCCACCAGATAGCTTGTGGGCACACTCTGACTGTTGCCCTCACTACATCAGGTCATGTATTTACTATGGGAGGCACTACATATGGTCAACTAGGAAATCCTTTGTCAGATGGAAAAACACCTACCATGGTTCAAGATAAGTTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGAGCAAATCATGTTGCTGTCTTGACATCGAGAAGTGAATTATATACCTGGGGAAGAGGAGCAAATGGAAGATTGGGACACGGAGACACAGAAGACCGGAAATCTCCAACATTGGTAGAAGGTTTGAAAGACAGGCATGTGAAAAATATCTCATGTGGCTCAAACTTTACGTCTTGTATATGCATCCACAAATGGGTCTCTGGAGCTGATCAATCTGTCTGCTCTGGTTGTCGACAAGCATTTGGTTTTACTAGGAAAAGGCACAATTGTTATAACTGTGGGTTGGTGCATTGCCATGCCTGCAGTTCCAAGAAGGCAATGAAAGCAGCATTGGCTCCAACACCAGGAAAACCACATCGCGTGTGCGACGCTTGTTACAGTAAGCTTAAAGCTAGTGAGACTAGTAGTATTTCCTCTTTTAATAGAAAAGTTACTCCTCCTCGTCAATCCATAGATGGCAGGGAAAGATTAGATCGGGGAGAGGTAAGGTCATCAAGAATTCTCATGTCTTCCGTCACTGAACCAGTAAAATTCCTTGAGATATGGGGTAACAAGCCTGAATCTAAACATGATTTTTCTTCCATAGTCCGTACTCCTCCATCACTTTCACAATTCAAAGATGTTGCATTCCCAAGTTCATTGAAGCCCATTCATCATGCTTTCAAGTCTGCTGCTGTAACTTTAAGCCCACCACGAACTCCACCCGCTAATTCAAGACCTGCATCACCATATGCAAGAAGACCAAGTCCACCACGTTCTGCTACCCCTGGATTTTCTAGAAGCATTATTGAAAGCCTGAGGAAGACAAATGAGCTTCTGAACCAAGAAGTCTCAAAATTACAGAGCCAAATTCGAAGTTTGAAGGAGAAGAGTGACGTGCAAGATTTGGAGATTCAAAAGCTAAGGAAAAATGTTAAGAAAGCTACCGCATTGGCTGGGGAGGAATCTTCTAAGCATAGAGCAACAAGGGAATTTATCAAGTCCATGACAGATCAGTTGAAGGATGTGACCCAAAATATGTCGCCGGAAAATTTAGACAGTGAAACCTTGAGAACCGTGCATGCTCAAGCAGAAGATTTTCTAAGAGAAAATCCAGAATCTGAAGCATCTTCCATACTATCAAGCTTGGAGTCTAATCAAGAAATTGCTCATGATACACCTGCTTCTGATGTCAACTGCTCCAAATTGCGTGAAAATAGACTAGAAGAAACTGTTGATGCTGCTGGAGCTGAGACATCGCAAGATGGAGGAAATTCTCTTCAAGAAAGTAATAGATCATCTGTATCTAGTATAGAGGCAGCAGCTCCTCCACAAAGCTCCGAAAATGGTTCACAATCACTGGACTCTTCGAGATCTGGGAGAGAAAGAGAATCACAAGTCATCGAACAATTTGAACCTGGTGTTTATGTGACCCTAATAGTACGGCCAAGTGGAGTTAAAGTTTTCAAACGAGTTAGATTCAGTAAACGAAGGTTCGATGAACAGCAGGCAGAAGAATGGTGGAACAAAAATAAAGATAGGGTGTTTAGAAAATATAGTTCAACAACAACAAATCCAACAGCTACTGGATCATCTAGCACTCAATCCCTAGCTGAAGAGAAAATTGAGGCATCATCTTCCTGA | 3924 | 0.4332 | MLTVHTFSESFRSQIFTLSRVIPPFSLSFNALLPSDFCSVFLLCSSLTHTPFCFFTFPHPLVSSRASQTFNHPLSLFPAFSHAHTQSLCPLSSLFCSVGTEVLSIFCSVASSSSCSSPLLPVLPSLFTLSAISLLFLHTLSAFSISRRSLSHFLHLLYSQLLCSLTPPLDLSPVTLSSPFFHLLFRHFLKRLSLLLLLAWGSIPHFCRLSFVFGNLLTVSSDGMADLASYGNPERDIEQALVALKKGSQLLKYNRKGKPKFRPFRLSPDATTLIWISHGREKNLKLSSVSRIIPGQRTAVFRRHLRPEKDYLSFSLLYKNGERSLDLICKDKAEAEIWFAGLKALISTGQHTLRSKSNLSDDGVDFFPISRPFGATLEFTSSIARGRDSTDSGSRESPLHWATSDVASERANMQLRTSASDGFRVSVSSTPSCSSGGSGLDDIESLGDVYIWGEVWTDGISPDGLGSQVPSMTDVLVPKPLESNVVLDVQQIASGVRHIVLVTRQGEVFSWGEEFGGRLGHGIDKDFYRPQLVEFLAVHNVEFVACGEYHSCAVSTSGDLFTWGDGAHNAGLLGHGSNVSHWIPKRVTGPLEGLQVLSIACGTWHSALATSNGKLFTFGDGTFGVLGHGDRKSVSYPKEVQSLSGLKTIKVACGVWHTAAIVEVMGHQGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTLTVALTTSGHVFTMGGTTYGQLGNPLSDGKTPTMVQDKLVGEFVEEISCGANHVAVLTSRSELYTWGRGANGRLGHGDTEDRKSPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKAMKAALAPTPGKPHRVCDACYSKLKASETSSISSFNRKVTPPRQSIDGRERLDRGEVRSSRILMSSVTEPVKFLEIWGNKPESKHDFSSIVRTPPSLSQFKDVAFPSSLKPIHHAFKSAAVTLSPPRTPPANSRPASPYARRPSPPRSATPGFSRSIIESLRKTNELLNQEVSKLQSQIRSLKEKSDVQDLEIQKLRKNVKKATALAGEESSKHRATREFIKSMTDQLKDVTQNMSPENLDSETLRTVHAQAEDFLRENPESEASSILSSLESNQEIAHDTPASDVNCSKLRENRLEETVDAAGAETSQDGGNSLQESNRSSVSSIEAAAPPQSSENGSQSLDSSRSGRERESQVIEQFEPGVYVTLIVRPSGVKVFKRVRFSKRRFDEQQAEEWWNKNKDRVFRKYSSTTTNPTATGSSSTQSLAEEKIEASSS | 1307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere14g1812 | 1307 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 835 | 897 | IPR017455 | - | |
| Dere14g1812 | 1307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 833 | 908 | IPR013083 | - | |
| Dere14g1812 | 1307 | SUPERFAMILY | RCC1/BLIP-II | 446 | 832 | IPR009091 | - | |
| Dere14g1812 | 1307 | Gene3D | - | 236 | 355 | IPR011993 | - | |
| Dere14g1812 | 1307 | SMART | fyve_4 | 829 | 898 | IPR000306 | GO:0046872 | |
| Dere14g1812 | 1307 | MobiDBLite | consensus disorder prediction | 1172 | 1226 | - | - | |
| Dere14g1812 | 1307 | MobiDBLite | consensus disorder prediction | 1178 | 1216 | - | - | |
| Dere14g1812 | 1307 | MobiDBLite | consensus disorder prediction | 1280 | 1307 | - | - | |
| Dere14g1812 | 1307 | MobiDBLite | consensus disorder prediction | 1134 | 1154 | - | - | |
| Dere14g1812 | 1307 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 677 | 723 | IPR000408 | - | |
| Dere14g1812 | 1307 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 557 | 608 | IPR000408 | - | |
| Dere14g1812 | 1307 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 506 | 554 | IPR000408 | - | |
| Dere14g1812 | 1307 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 780 | 827 | IPR000408 | - | |
| Dere14g1812 | 1307 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 726 | 775 | IPR000408 | - | |
| Dere14g1812 | 1307 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 612 | 661 | IPR000408 | - | |
| Dere14g1812 | 1307 | CDD | FYVE_like_SF | 841 | 893 | - | - | |
| Dere14g1812 | 1307 | Coils | Coil | 1030 | 1071 | - | - | |
| Dere14g1812 | 1307 | PRINTS | Chromosome condensation regulator RCC1 signature | 558 | 574 | IPR000408 | - | |
| Dere14g1812 | 1307 | PRINTS | Chromosome condensation regulator RCC1 signature | 716 | 734 | IPR000408 | - | |
| Dere14g1812 | 1307 | PRINTS | Chromosome condensation regulator RCC1 signature | 774 | 795 | IPR000408 | - | |
| Dere14g1812 | 1307 | PRINTS | Chromosome condensation regulator RCC1 signature | 508 | 524 | IPR000408 | - | |
| Dere14g1812 | 1307 | PRINTS | Chromosome condensation regulator RCC1 signature | 615 | 629 | IPR000408 | - | |
| Dere14g1812 | 1307 | PRINTS | Chromosome condensation regulator RCC1 signature | 489 | 502 | IPR000408 | - | |
| Dere14g1812 | 1307 | PRINTS | Chromosome condensation regulator RCC1 signature | 599 | 615 | IPR000408 | - | |
| Dere14g1812 | 1307 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 613 | 664 | IPR000408 | - | |
| Dere14g1812 | 1307 | CDD | PH_PLC_plant-like | 235 | 347 | - | - | |
| Dere14g1812 | 1307 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 418 | 666 | - | - | |
| Dere14g1812 | 1307 | Pfam | FYVE zinc finger | 831 | 897 | IPR000306 | GO:0046872 | |
| Dere14g1812 | 1307 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 281 | 1099 | - | - | |
| Dere14g1812 | 1307 | Gene3D | - | 673 | 832 | IPR009091 | - | |
| Dere14g1812 | 1307 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 651 | 661 | IPR000408 | - | |
| Dere14g1812 | 1307 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 558 | 612 | IPR000408 | - | |
| Dere14g1812 | 1307 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1225 | 1279 | IPR013591 | - | |
| Dere14g1812 | 1307 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 675 | 726 | IPR000408 | - | |
| Dere14g1812 | 1307 | Gene3D | - | 406 | 568 | IPR009091 | - | |
| Dere14g1812 | 1307 | Gene3D | - | 569 | 672 | IPR009091 | - | |
| Dere14g1812 | 1307 | Pfam | Transcription factor BRX N-terminal domain | 1081 | 1116 | IPR027988 | - | |
| Dere14g1812 | 1307 | MobiDBLite | consensus disorder prediction | 1130 | 1160 | - | - | |
| Dere14g1812 | 1307 | ProSiteProfiles | BRX domain profile. | 1225 | 1280 | IPR013591 | - | |
| Dere14g1812 | 1307 | SUPERFAMILY | FYVE/PHD zinc finger | 831 | 899 | IPR011011 | - | |
| Dere14g1812 | 1307 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 447 | 505 | IPR000408 | - | |
| Dere14g1812 | 1307 | Pfam | Pleckstrin homology domain | 238 | 346 | IPR001849 | - | |
| Dere14g1812 | 1307 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 727 | 778 | IPR000408 | - | |
| Dere14g1812 | 1307 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 492 | 502 | IPR000408 | - | |
| Dere14g1812 | 1307 | MobiDBLite | consensus disorder prediction | 992 | 1026 | - | - | |
| Dere14g1812 | 1307 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 506 | 557 | IPR000408 | - | |
| Dere14g1812 | 1307 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 779 | 830 | IPR000408 | - | |
| Dere14g1812 | 1307 | SUPERFAMILY | PH domain-like | 236 | 346 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere14g1812 | Dere-ChrDere14 | 21870143 | 21880827 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere14g1812 | 1226 | 1280 | Major Intrinsic Protein MIP | AT1G31880 | 40.000 | 1.13e-08 | 57.0 |