Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1811 ATGGGGCAAACGCAATCCAAGGGCGAGCTGCTTTACCAGCAAGTTAGTTATGGGAACATCGAAGGAATCAAAGCCCTTCATAGGGAAGGAGCAGGCCTAGAGTGGGTGGACAAAGATGGAAAGACGCCATTGATTGTTGCTTGTATGAACCCTGAGCTTTATGATGTAGCCAAAACTTTGATAGAACTTGGTGCCAATGTCAATGCATACCGTCCGGGACGACATGCTGGTACTCCATTACATCATGCAGCTAAAAGAGGTCTTGAACGTATTGTCAAGTTACTTCTTTTGCGTGGAGCTAATCCATTGATCATGAATGATGATTGCCAAACTGCTCTTGATGTTGCTAGGGCCAAAGGCCACAGTAATGTTGTGCGTGCTTTTGAGAGTCATCTTTGCTTGTTCTCTGGTTGGCTGCGGGAGTTCCATGGACCTGGATTCCTAGAAGTAGTAGCTCCACAGCTGGTATCTAGAAAAGTTTGGGTGGTTGTTTTACCAGCTGGTTCTCGTAATCTCTCTGGACCCTACAAGCTGGAGCTTGCCATATATACTAGTATGCAGGATGCACAACCACGTACAATTATTGCACTGTGGAAGGCCAACTTGGAAGAACCAAAGCTACACCAGTCAGATCCTTCAGTGACTATTGCTGATACCACTACCAAAACACGCATTAAACTTGCACCTGCAAGTGAGAATGACAAGCAACAACTTAAGTGGTTTTCTGATGCTTGCAAAGGAATTCCACAGGAAAATCCAGCATTTTTGCAAAATAACATGAGACCAGTTCCTCCCACAGCACCACCAGCTGCAGAAGATCAAGAGATGGCTGCTGCTATCAGAGTCTCCATACAGTCTGTCATGCAGGAGAGGCCTCCTCTTGCTGATGCCCTCCCAAACTTTGAAGCAAGTTCTTCTAGTGGAGTGAATACAAGCAAGCATGGTTCGCTTGGTTCACCAAATTCAGTGACAAGTAGTACTTTGCCTGTACATGAAGGTGGACTGGGTGGCAGTTCATGTGAGCCTGCCCATATTCATGACTCTATCCCTGTTTCCCAAAGTTCTAGTGGTTTGAATCTGATTCCATCAGCTCCTCCAATTGTGGATGAGACTCCAATAGATGGTCCCATTCATTATCCATCAATTGATTTAAGCCCTGTTGATATATTATCTCAAGCTGTTGAGAAGTCGCCTAAAGAAGAAAAAGATGCTGTTGGAAGTACTGGTTCATCTTGTGTGATTTGTTTAGATGCTCCAGCCGAGGGAGCATCCATACCCTGCGGCCATGTCGCCGGATGCATGCCTTGCTTGAATGAGGTCAAAGCAAAAAAATGGGGTTGCCCAGTGTGTCGAGCAAAGATTGAACAGGTTATAAAGATATATCACGTTTGA 1392 0.4533 MGQTQSKGELLYQQVSYGNIEGIKALHREGAGLEWVDKDGKTPLIVACMNPELYDVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLERIVKLLLLRGANPLIMNDDCQTALDVARAKGHSNVVRAFESHLCLFSGWLREFHGPGFLEVVAPQLVSRKVWVVVLPAGSRNLSGPYKLELAIYTSMQDAQPRTIIALWKANLEEPKLHQSDPSVTIADTTTKTRIKLAPASENDKQQLKWFSDACKGIPQENPAFLQNNMRPVPPTAPPAAEDQEMAAAIRVSIQSVMQERPPLADALPNFEASSSSGVNTSKHGSLGSPNSVTSSTLPVHEGGLGGSSCEPAHIHDSIPVSQSSSGLNLIPSAPPIVDETPIDGPIHYPSIDLSPVDILSQAVEKSPKEEKDAVGSTGSSCVICLDAPAEGASIPCGHVAGCMPCLNEVKAKKWGCPVCRAKIEQVIKIYHV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1811 463 CDD RING-HC_XBAT35-like 412 461 - -
Dere14g1811 463 SMART ring_2 412 450 IPR001841 -
Dere14g1811 463 Gene3D - 3 147 IPR036770 -
Dere14g1811 463 ProSiteProfiles Zinc finger RING-type profile. 412 451 IPR001841 -
Dere14g1811 463 PANTHER ROLLING PEBBLES, ISOFORM B 25 246 - -
Dere14g1811 463 Pfam Zinc finger, C3HC4 type (RING finger) 410 457 - -
Dere14g1811 463 SMART ANK_2a 39 69 IPR002110 GO:0005515
Dere14g1811 463 SMART ANK_2a 75 104 IPR002110 GO:0005515
Dere14g1811 463 SMART ANK_2a 108 137 IPR002110 GO:0005515
Dere14g1811 463 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Dere14g1811 463 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Dere14g1811 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 462 IPR013083 -
Dere14g1811 463 MobiDBLite consensus disorder prediction 297 357 - -
Dere14g1811 463 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Dere14g1811 463 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Dere14g1811 463 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Dere14g1811 463 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Dere14g1811 463 MobiDBLite consensus disorder prediction 300 332 - -
Dere14g1811 463 SUPERFAMILY RING/U-box 411 457 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1811 403 460 C3H Transcription Factor Family AT3G06140 37.931 5.87e-08 52.8