Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1797 ATGATTAAATGTATTTGTTCTGGGGAGCAAATACGGGTAGATGAATTGGGTTATTCATCAGAGTCATTGGCTACCAGGGATTATTCAGCAAGTAATTATTCATCGAGGCCCGGAGAAATTGACACGAAGGTGGATAATAGCAACATCGAAGAAGCGGAGTCATCTCTTCGTGAAAGCGGGTATTTGAACTACGAGGAAGCTAGAGCCTTGCTTGGAAGGCTCGAGTATCAGAAAGGAAATATCGAAGCTGCTCTTCATGTGTTTGGAGGAATAGATATGGCTGCTATAACTCCGAAAATGAAAGTCTCCATATCTCGAAGATGTGAAGCCAATAAGCGCCATTCACAAAGTGATGCTGTCCCTTCTATGTCAATGCACGCTATTAGTTTACTCCTTGAAGCTGTTTTCCTCAAAGCAAAATCATTACAGATTCTTGGAAGGTTTCAAGAAGCTGCTCAATCATGCAAGACTATTTTAGATACTGTTGAATCTGCCTTACCGGAAGGCTTGCCTGAAAACTTTGGTTTGGACTGTAAATTACAAGAGACCCTAACAATGGCAGTAGAGCTTCTTCCAGAGTTGTGGAAACTTGTTGGCTCTCCCCAAGATGTAATCTTATCATATAGGAGGGCTTTGCTTTATCGTTGGAATTTAGACATTGAAACCACTGCAAGAATACAAAAGGAATTTGCTATGTTTCTTTTGTACAGCGGCTGCGAAGCAAACCCTCCGGCGCTTCGTTTGCAGTTGGATGGTTCCTTTGTGCCAAGAAACAACATAGAAGAGGCTGTTCTTCTGCTTCTGATTCTGCTGAGGGATTTTGTTCTTGGAAGGATTTTGTGGGACCCTTCAATAATCGATCACCTTTCCTTTGCTCTAAGTGTTTCTGGGGAATTAAAAACCATTGCACATCAGGTTGAGGAATTGCTTCCAGGAACTGTAGAGAATAAAGACAAGTATTTCATTCTAGCGCTTTGTTACTATGGAGAAGGTGAGCATTTGATTGCTTTGGATCTTTTAAGGAACTTCTTGAATAACCGAGAGAGCTTGGAATGCTTACAACAATTACTACTAGCTTCCAAAATATGTGGAGAGAGTGCAGTTTGTGTTCAAGAAGGGATTGAATATTCACACAAAGCCATATCTCAATTGCATGGAAAATGCCAGCAAATGGTAGCTGTTGCAAATTGCTTACTTGGTGTTCTACTATCGGCGAAATCCAGGCTTGTTGCTTCTGAATCAGAGAAGATTTTAAAGCAGTCTGAAGCACTCAGTGCACTAATGACTGCCAAGAGAATGATGAGGGAAAGCGATCCATATATTGTCTTTCATCTTTGCCTAGAATATGCTGAGCAGAGGAAATTGGATATTGCTCTTGATCATGCGAAGCAATTGATTGAACTTGAGGCTGGGTCTAATATCAAAGGATATATACTTCTGACCCGGATATTTTCAGCTCGAAAACAGTTTGCTGAAGCAGAAATTGTTATTGACGCTGCTTTAGATCAAAGTGGAAAATGGGATCAGGGAGAATTGTTGCAAACTAAAGCTAAACTGCAGATTGCTCAGGGCCACTTGAAGAATGCTGTTGAAACATACACTCTTCTTCTTGCAGTTCTTCAAGTCCAAAATAAAAGCTTAGGTATTGCCAGTAAGTTTCTGAAGGGTAAGGGAAACCGTGATAGAAGACTTGAAATGGAAATATGGCACGATTTAGCCTATGTGTATACAAACTTGTCACAGTGGCGAGATGCTGAAGTTTGTCTTGCAAAATCTCAGGCTATCTATCCCTTTTCTGCTTCTAGATGGCACTCCACAGGTTTGCTCTACGAAGCCAGAGGTCTTAACCAGGAAGCTTTGAACTCATTTAGAACAGCATTAGATATCGATCCCAACCATGTGCAGAGTTTGATATCCGCAGCCCGTGTACTCAGGCAGCTTGGTGGTCAATCATTGTCAGTAGCGAAGAGCCTTCTTTCCGATGCTCTGCGGCTCGATAGAACAAACTCGTCTGCTTGGTACAATCTTGGATTGCTTTACAAAGCTGATGAGGGGACATCATCAGTGGAAGCTGCTGAATGCTTTGAGGCAGCAGCTCTTCTTGAAGAGACTTCTCCAATTGAACCCTTTAGATAG 2136 0.4181 MIKCICSGEQIRVDELGYSSESLATRDYSASNYSSRPGEIDTKVDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFGGIDMAAITPKMKVSISRRCEANKRHSQSDAVPSMSMHAISLLLEAVFLKAKSLQILGRFQEAAQSCKTILDTVESALPEGLPENFGLDCKLQETLTMAVELLPELWKLVGSPQDVILSYRRALLYRWNLDIETTARIQKEFAMFLLYSGCEANPPALRLQLDGSFVPRNNIEEAVLLLLILLRDFVLGRILWDPSIIDHLSFALSVSGELKTIAHQVEELLPGTVENKDKYFILALCYYGEGEHLIALDLLRNFLNNRESLECLQQLLLASKICGESAVCVQEGIEYSHKAISQLHGKCQQMVAVANCLLGVLLSAKSRLVASESEKILKQSEALSALMTAKRMMRESDPYIVFHLCLEYAEQRKLDIALDHAKQLIELEAGSNIKGYILLTRIFSARKQFAEAEIVIDAALDQSGKWDQGELLQTKAKLQIAQGHLKNAVETYTLLLAVLQVQNKSLGIASKFLKGKGNRDRRLEMEIWHDLAYVYTNLSQWRDAEVCLAKSQAIYPFSASRWHSTGLLYEARGLNQEALNSFRTALDIDPNHVQSLISAARVLRQLGGQSLSVAKSLLSDALRLDRTNSSAWYNLGLLYKADEGTSSVEAAECFEAAALLEETSPIEPFR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1797 711 SMART tpr_5 600 633 IPR019734 GO:0005515
Dere14g1797 711 SMART tpr_5 510 543 IPR019734 GO:0005515
Dere14g1797 711 SMART tpr_5 439 472 IPR019734 GO:0005515
Dere14g1797 711 SMART tpr_5 474 507 IPR019734 GO:0005515
Dere14g1797 711 SMART tpr_5 670 705 IPR019734 GO:0005515
Dere14g1797 711 SMART tpr_5 132 165 IPR019734 GO:0005515
Dere14g1797 711 SMART tpr_5 566 599 IPR019734 GO:0005515
Dere14g1797 711 Gene3D Tetratricopeptide repeat domain 282 562 IPR011990 GO:0005515
Dere14g1797 711 ProSiteProfiles TPR repeat profile. 600 633 IPR019734 GO:0005515
Dere14g1797 711 Gene3D Tetratricopeptide repeat domain 563 706 IPR011990 GO:0005515
Dere14g1797 711 SUPERFAMILY TPR-like 437 538 IPR011990 GO:0005515
Dere14g1797 711 SUPERFAMILY TPR-like 511 682 IPR011990 GO:0005515
Dere14g1797 711 PANTHER PROTEIN NPG1 2 711 IPR043376 -
Dere14g1797 711 Pfam Tetratricopeptide repeat 602 633 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1797 Dere-ChrDere14 21511568 21516137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1797 2 711 Calmodulin-binding Proteins AT4G28600 54.282 0.0 730