Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1788 ATGGATTCAGATCAAGGGAAGCTCTTTATCGGCGGGATATCATGGGAAACGACGGAGGATAAGCTCAAGGAGCATTTCAGCAACTATGGCGATGTCCTTCACGCTTCAGTTATGAGGGAGAAGAATACTGGGAAGCCCAGAGGCTTTGGGTTCGTGGTATTTGCAGATCCTTCGATTCTAGATAGGGTTCTCGAGGACAAGCACGTAATTGACGGAAGAACGGTAGATGCTAAGAAGGCTTTCTCAAGAGAGGATCAACAAATTTCTACCACTTCCAGAGCTGGAAATCCAAATTCTGCTAGGAATGGTGGACATGGTGGACATATCAAGACAAAAAAAATCTTTGTTGGAGGGTTGCCTCCTACCTTGTCTGAAGAAAAGTTTCGTGAGTATTTTGAGGCTTATGGCCATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGTCGACCACGAGGATTTGGGTTTATATCCTTTGATAGTGAAGAGGCAGTTGACAGGGTTTTGCACAAATCATTTCATGACCTAGATGGTAAGCAGGTTGAAGTGAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTACAATGAGTGGTGCTGGTGGGTATCAGGGGTATGGGGCATCTGGTGGCAACCAAAATGCATATGACATTCAGCTGGATTCTAGTAGATATATGCAGCCCCAAAGCGCGGGGGGTGGATTCCCACCTTATGGTTCTTCTGGGTTCAGTGCTCCTGGCTATGGTTATGGTCCGGCTAATAACGGCATGGGTTATGGTGGGTATGGAAGTTTTGGTGGCGCTAGCGCTGGGTATGGTGGACCTGCTGCTGCAACTTATGGGAGTCCAAATGTCCCTAATGCTGCTTATGCTGGTGGTACACCTGGTGGGCCTAGAAGTTCATGGCCTGCTCAAGCTCCCTCTGGTTATGGTTCTATGGGGTATGGGAATACTGCTCCATGGGGTGCTCCAAGTGGTGGCCCTGGTTCTGCATCTGTGGGTCAGTCCCCAGGTGGAGCTGGATTTGCGAATCAAGGTTATGGATATGGTGGGTATGGTGGGTATGGTGGAAGTGATAGTTCTTATGGGAATCCAGGTGTATATGGTGCTGTTGGAGGGCGTTCTGGGAGTACCCCCAATAGTAATGCTAGTGGTCTAGGAGGGAGTGAACTTCAAGGGAGTGGTGGCGGCTATTCGGGAAGTGGCTATACAGATGCAAATGGAAGTTCAGGATATGGAAATGCAGCATGGAGATCTGATCCAGCACAAGCTTCTGGAAATTATGGGACTCCTCAGGGAAATGGCCCTCATAGTGGGCAAGTTGGTTATGGTGGTGGGTATGGTGGGGCTCAGGCCCGGCAAGCCCAACAACAGTAG 1389 0.4924 MDSDQGKLFIGGISWETTEDKLKEHFSNYGDVLHASVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKKAFSREDQQISTTSRAGNPNSARNGGHGGHIKTKKIFVGGLPPTLSEEKFREYFEAYGHVTDVVVMYDQNTGRPRGFGFISFDSEEAVDRVLHKSFHDLDGKQVEVKRALPKDANPGASGRTMSGAGGYQGYGASGGNQNAYDIQLDSSRYMQPQSAGGGFPPYGSSGFSAPGYGYGPANNGMGYGGYGSFGGASAGYGGPAAATYGSPNVPNAAYAGGTPGGPRSSWPAQAPSGYGSMGYGNTAPWGAPSGGPGSASVGQSPGGAGFANQGYGYGGYGGYGGSDSSYGNPGVYGAVGGRSGSTPNSNASGLGGSELQGSGGGYSGSGYTDANGSSGYGNAAWRSDPAQASGNYGTPQGNGPHSGQVGYGGGYGGAQARQAQQQ 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1788 462 CDD RRM2_Hrp1p 113 190 - -
Dere14g1788 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Dere14g1788 462 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Dere14g1788 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Dere14g1788 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
Dere14g1788 462 MobiDBLite consensus disorder prediction 81 107 - -
Dere14g1788 462 MobiDBLite consensus disorder prediction 380 441 - -
Dere14g1788 462 Gene3D - 4 88 IPR012677 -
Dere14g1788 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Dere14g1788 462 MobiDBLite consensus disorder prediction 84 99 - -
Dere14g1788 462 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 462 - -
Dere14g1788 462 FunFam heterogeneous nuclear ribonucleoprotein 1 107 223 - -
Dere14g1788 462 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676
Dere14g1788 462 Gene3D - 108 224 IPR012677 -
Dere14g1788 462 SUPERFAMILY RNA-binding domain, RBD 110 217 IPR035979 GO:0003676
Dere14g1788 462 MobiDBLite consensus disorder prediction 380 462 - -
Dere14g1788 462 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Dere14g1788 462 SMART rrm1_1 113 185 IPR000504 GO:0003723
Dere14g1788 462 SMART rrm1_1 7 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1788 Dere-ChrDere14 21349777 21352630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1788 6 227 Eukaryotic Initiation Factors Gene Family AT2G23350 24.786 1.98e-09 58.2