LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g1766	ATGAACAGTCTCATCCTCGGCCTCCTTCGAAACTACTCTCTTCCTCATTTCATCTCCAAGTTCCCAACATCCGATCGATTCGATTCAGCATCATCCACCATGTCTTTGCCAAATTGCTCGACGCAGGAACTGGCCCAGTTATTTGGTGCCAACACCTCCGACGCCACCGCCGCCGCCAGCTTCATATGTGACCGGTTCTCCGCCGTCACCAACAAGTTCTCTGACACCACCTTCGCCGTCGACAACACCTACCTCCTCTTCTCCGCTTACCTTGTCTTCTCCATGCAGCTCGGCTTTGCCATGCTCTGTGCCGGCTCTGTCCGCGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGTGGGCGGCCTCTTCTACTACCTCTTCGGCTTCGCTTTCGCCTTTGGAGGCCCCTCCAATGGCTTCATCGGCCGCCACTTCTTCGGCCTCAAGGACGTCCCCACCGCCAACTTTGACTACAGCTACTTCCTTTACCAGTGGGCCTTTGCCATCGCCGCCGCCGGCATCACCAGCGGCTCCATCGCCGAGCGAACCCAGTTCGTGGCTTATCTCATCTACTCATCCTTCTTAACCGGCTTCGTTTACCCGGTCGTGTCTCACTGGTTCTGGTCCGGTGACGGTTGGGCCAGCGCCACCAACCCAGACCTACTTTTCGGCACCGGAGTGATAGATTTCGCCGGCTCCGGCGTCGTCCACATGGTGGGTGGCATCGCTGGTCTGTGGGGCGCACTCATAGAAGGTCCCAGAATCGGTAGATTCGACCATTCGGGTGGATCCGTAGCTCTTCGTGGACACAGTGCTTCATTGGTCGTTCTCGGTACCTTCTTGTTATGGTTCGGATGGTACGGATTCAACCCAGGTTCGTTTACGAAGATTCTAAGCGCCTACGACACCGGAAACTACTACGGCCAGTGGAGCGCGGTTGGCCGAACCGCCGTGACCACCACCCTAGCTGGCTGCGCAGCCGCATTGACCACTCTCTTCGGCAAGCGCTTCCTCTCCGGTCACTGGAACGTGACGGACGTATGCAACGGCTTGCTCGGCGGCTTCGCCGCCATCACCGCGGGGTGCTCCGTCGTAGAACCATGGGCGGCCATTATCTGCGGGTTTGTGGCGGCGCTGGTGTTGATTAGCTGCAACAAGCTGGCGGAGAAGGCAAGGTTCGACGACCCGCTGGAGGCGGCGCAGCTGCACGGTGGTTGTGGTGCGTGGGGTATAATCTTCACGGCGTTGTTCGCGAAGAAGGAGTACGTGAACCAGGTGTACCCGGGCGTACCTGGTCGGCCATACGGGCTGTTCATGGGAGGTGGAGGGAAGCTATTGGCTGCTCACGTGATACAGATTCTGGTGATTACAGGGTGGGTCAGTGCCACCATGGGACCTCTCTTCTTCGTTCTTCATAAGCTCAAGCTTCTGCGAATTTCTGCAGAGGATGAATTGGCGGGTATGGATCTGACCCGACATGGAGGGTTCGCTTATGCTTATGAAGATGAGTCGCATAAACATGGGATTCAATTGAGAAAGATTGAACCCAATTATGCCAGTACTACCACTATGGATTAA	1596	0.5677	MNSLILGLLRNYSLPHFISKFPTSDRFDSASSTMSLPNCSTQELAQLFGANTSDATAAASFICDRFSAVTNKFSDTTFAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAVGGLFYYLFGFAFAFGGPSNGFIGRHFFGLKDVPTANFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSGDGWASATNPDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHSGGSVALRGHSASLVVLGTFLLWFGWYGFNPGSFTKILSAYDTGNYYGQWSAVGRTAVTTTLAGCAAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAALVLISCNKLAEKARFDDPLEAAQLHGGCGAWGIIFTALFAKKEYVNQVYPGVPGRPYGLFMGGGGKLLAAHVIQILVITGWVSATMGPLFFVLHKLKLLRISAEDELAGMDLTRHGGFAYAYEDESHKHGIQLRKIEPNYASTTTMD	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g1766	531	ProSitePatterns	Ammonium transporters signature.	235	260	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Dere14g1766	531	Pfam	Ammonium Transporter Family	84	504	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Dere14g1766	531	Gene3D	Ammonium transporter AmtB like domains	60	523	IPR029020	-
	Dere14g1766	531	FunFam	Ammonium transporter	62	519	-	-
	Dere14g1766	531	SUPERFAMILY	Ammonium transporter	80	485	-	-
	Dere14g1766	531	PANTHER	AMMONIUM TRANSPORTER	53	500	-	-
	Dere14g1766	531	NCBIfam	ammonium transporter	81	504	IPR001905	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g1766	Dere-ChrDere14	20978517	20980299	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g1766	38	528	Inorganic Solute Cotransporters	AT4G13510	81.414	0.0	815