Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1760 ATGCGAAGACCGGAGATTGAACCAGGACCTCTTCTCTTTTCTCTCTATGGAATAGCCACAACCCTTTTTGCAATGCTGAAGATTTATATTTCTCGTGGTGTTGGCGATGGGGGCAGAACCCACCGTGAGAAGCATGATTCTGAGAGAGAAATGGGTTCCAATGGTTCTGTAGAGGTTCCTGTGGAGAAGGAAATGGGTTCTGATAGCTCTAGGCCATTGTCATCCCAAGCAGAGATGGAAGAGTCTACTTGTCATAGGAAGCCTTCACGGGAAACTTCATTTGAAGAGTTCCTTAAGGCTACAGATACAAGAGTTATGTCAGAGGAAGAATATCTAAATTCCAATGTCAGACAAGAACCGTCAATCCAAGCTGAAGTGCCGAAAGTGAACCAAGAGTTGACTTGTGTAAATAAGGTCTCTGTAGATAAAGAAGTTGTTACTTCTGATGGCAATAAAGTAAGAATCCTCAAAGTTTGCTCTATCCCAGCTTTTCAGAAATCTTCGCGGGTAAATAAGGAAAGGGTTGAAGATAAAGTTTCAAATGTGGAGGATGGAGATTTTCCAGAAGACCCAGACTGGTTTGTAGTGGGAAGGACACTTGTCACTGCGCTTTCAACTACCAAAGGGAGGAAATTAGTGGACAATGAGATTGTACATTTCAATTTCCCACCTCCAGCTTCGAGATACAACTCACAGTGGATTGCTCGCATTTCAACCAAGCGTTCCGGAGAGGTTGGACGGCTTCCTATGGAATGGGCCAAATTGGTTATTCCACTTGTGCGTTCTGGAAAGGTTATAGTTAGAGGCCGATGCGTAGCTGTAGCACCTGTCTTACAAATGATGCAAGAAATCATGTTGTATGTAAGCTTTTACATCCATCACTTCATATTCAGTTTTTCGGAGGTCAACACTTCTTGGAAGCTTGATGGCTCTACTTACGTTGACCTTTCTTTTTATCCTCTCCCTACATTGTTCAGATTGCTGGAAATGAAGCCACATCAGAATGCTGATTTTACCCCAGAGGAACTTGATTCTAGGAAGCGTTTGCTTAATTTGAGGGGTAATTCAGATGAAGCTGCATCAGACTTGCCTGTACTGAAACGAAGAAGAGGTTGCCTTCCAGATCAAGACAATGATGAACAAGCTGAGATAGATGCGCCTAGTACGCTGATGTGTGATCTAAAGCCTTACCAGAAACAAGCTCTGTATTGGATGTCAGAATTAGAAAAAGGAGCTGATGTTGGAAATGCCGCAAGTACTCTTCATCCTTGCTGGGCAGCCTATTGTATAAACGATGAATCTCAAATGCTTTCTGGCAGGAGGGTTTCCACTATATACGTGAACAACTTCACAGCAGAAGCAACAACACAGCTTCCACCTGCGGCACAAATGGCAAGAGGAGGAACTCTTGCAGATGCAATGGGACTTGGAAAGACTGTCATGACTATTGCTTTAATTCTTGCAAGACAAGGAAGAGGAGATAATATTGGTCTTCGAAGGAAGAGGAAGAAGGATTCTCATACTGACACCTTATTTAAAGCAGATGGTGGCACTCTTATTGTTTGTCCTATGGCCTTGTTAGGTCAATGGAAGGATGAGCTTGAAACCCATTCGGAGCCGGGAAGTGTATCCATTTTCGTTCACTATGGCGGGGATAGAACCAATGATCCTCGGGTGATCTCAGGGCATGATGTTGTCTTGACAACATATGGCGTCCTGGCAGCTGCATATAAAACCTACGGAGAGAATAGTATTTACCATCGGGTCAACTGGCACAGGGTGGTCCTTGACGAAGCTCATAACATTAAAGCCTATAAAACACATGCTGCACAAGCTGCTTTCGCTTTGTCCTCACACTGCCGTTGGTGCCTTACTGGAACCCCTCTTCAGAATAGTTTGGAAGACCTATACAGCCTGTTGGGCTTCTTGCATGTTGAACCATGGTGCAACTATGCATGGTTTAATAAATTGGTTCAACGGCCTTATGAGAATGGTGATCCAAGAGGCCTGAAATTAGTCAAGGCCATATTGAGGCCACTGATGTTAAGAAGAACGAAGGAAACAAAGGATAAATACGGAAGGCCCATACTTGCTCTTCCACCAACTGATATTAAATTAATTGAGTGTGAACAGTCAGAAGCTGAGTCTGAATATTATAATGCCCTCTTCCGTAAATCTAAAAATATCCCGTCTCGTGCATACATTGAAATAGCCATGGAGGCTATTCGCAAGGGTGAAAAAGTAGAATGCCCTATATGTATGGAATCTGCAGATGATCCTGTGTTCACTCCATGTGCACACAGGATGTGTAGGGAATGTTTACTTTCTAGCTGGAGCACCCCAACGAGTGGTCCCTGTCCTCTCTGCCGTCAGAACCTAAACAGAAACGATCTAATGAATTGTCCATTTGAGAATGAATTCATGGTTGCTGATGTTGAGAAGGACTGGAAGGAGTCTTCCAAGGTTTCAAAGCTTTTGGAATATTTGCAACACATTCAGCAATATCGCGCTGGTGAAAAGAGCATTGTGTTCAGCCAGTGGACTGCGTTTTTGGACCTCCTGGAGATTCCTTTGAAGCGAAAGGGAATCGGATATTTGAGATTTGATGGGAGTTTGGTACAAAGGCAGCGGGAAAAGATTATAAAGATAACTACTGATTATTTCTTTCCATCAAATTCCATTTCAGGTTTTTTGATGTCACTGAAAGCTGGTGGTGTGGGGTTGAACTTGACTGCAGCCTCAAATGTTTTTATAGTGGATCCGTGGTGGAATCCTGCGGTTGAGGAACAAGCAATCATGAGAATTCATCGTATAGGACAAGAGCGAACCGTCGTTGTTAGAAGATTCATTGTCAAGGACACGGTGGAAGAACGGCTGCAACTAGTGCAGGCGAAGAAGCAGAGGATGATAAATGGAGCCCTCACAGATGAGGAGGTTCGGTCAGCTAGGATTGATGACCTCAAAATGCTGTTCAGATGA 2979 0.4367 MRRPEIEPGPLLFSLYGIATTLFAMLKIYISRGVGDGGRTHREKHDSEREMGSNGSVEVPVEKEMGSDSSRPLSSQAEMEESTCHRKPSRETSFEEFLKATDTRVMSEEEYLNSNVRQEPSIQAEVPKVNQELTCVNKVSVDKEVVTSDGNKVRILKVCSIPAFQKSSRVNKERVEDKVSNVEDGDFPEDPDWFVVGRTLVTALSTTKGRKLVDNEIVHFNFPPPASRYNSQWIARISTKRSGEVGRLPMEWAKLVIPLVRSGKVIVRGRCVAVAPVLQMMQEIMLYVSFYIHHFIFSFSEVNTSWKLDGSTYVDLSFYPLPTLFRLLEMKPHQNADFTPEELDSRKRLLNLRGNSDEAASDLPVLKRRRGCLPDQDNDEQAEIDAPSTLMCDLKPYQKQALYWMSELEKGADVGNAASTLHPCWAAYCINDESQMLSGRRVSTIYVNNFTAEATTQLPPAAQMARGGTLADAMGLGKTVMTIALILARQGRGDNIGLRRKRKKDSHTDTLFKADGGTLIVCPMALLGQWKDELETHSEPGSVSIFVHYGGDRTNDPRVISGHDVVLTTYGVLAAAYKTYGENSIYHRVNWHRVVLDEAHNIKAYKTHAAQAAFALSSHCRWCLTGTPLQNSLEDLYSLLGFLHVEPWCNYAWFNKLVQRPYENGDPRGLKLVKAILRPLMLRRTKETKDKYGRPILALPPTDIKLIECEQSEAESEYYNALFRKSKNIPSRAYIEIAMEAIRKGEKVECPICMESADDPVFTPCAHRMCRECLLSSWSTPTSGPCPLCRQNLNRNDLMNCPFENEFMVADVEKDWKESSKVSKLLEYLQHIQQYRAGEKSIVFSQWTAFLDLLEIPLKRKGIGYLRFDGSLVQRQREKIIKITTDYFFPSNSISGFLMSLKAGGVGLNLTAASNVFIVDPWWNPAVEEQAIMRIHRIGQERTVVVRRFIVKDTVEERLQLVQAKKQRMINGALTDEEVRSARIDDLKMLFR 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1760 992 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 459 646 IPR014001 -
Dere14g1760 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 743 799 IPR013083 -
Dere14g1760 992 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 824 992 IPR001650 -
Dere14g1760 992 SMART ultradead3 390 659 IPR014001 -
Dere14g1760 992 ProSiteProfiles Zinc finger RING-type profile. 750 790 IPR001841 -
Dere14g1760 992 FunFam DNA repair protein RAD5B 456 685 - -
Dere14g1760 992 Pfam SNF2-related domain 397 726 IPR000330 GO:0005524|GO:0140658
Dere14g1760 992 CDD SF2_C_SNF 819 950 - -
Dere14g1760 992 MobiDBLite consensus disorder prediction 36 52 - -
Dere14g1760 992 SMART HIRAN_2 196 292 IPR014905 GO:0003676|GO:0008270|GO:0016818
Dere14g1760 992 Gene3D - 800 989 IPR027417 -
Dere14g1760 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 980 IPR027417 -
Dere14g1760 992 SMART ring_2 750 789 IPR001841 -
Dere14g1760 992 Pfam Helicase conserved C-terminal domain 822 939 IPR001650 -
Dere14g1760 992 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 186 728 - -
Dere14g1760 992 MobiDBLite consensus disorder prediction 34 93 - -
Dere14g1760 992 CDD DEXDc_SHPRH-like 394 684 - -
Dere14g1760 992 Gene3D - 450 685 IPR038718 -
Dere14g1760 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 684 IPR027417 -
Dere14g1760 992 ProSitePatterns Zinc finger RING-type signature. 765 774 IPR017907 -
Dere14g1760 992 SUPERFAMILY RING/U-box 734 795 - -
Dere14g1760 992 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 592 601 IPR002464 -
Dere14g1760 992 SMART helicmild6 852 939 IPR001650 -
Dere14g1760 992 CDD RING-HC 749 789 - -
Dere14g1760 992 Pfam HIRAN domain 199 288 IPR014905 GO:0003676|GO:0008270|GO:0016818
Dere14g1760 992 Pfam Zinc finger, C3HC4 type (RING finger) 747 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1760 Dere-ChrDere14 20898402 20905503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1760 726 992 RAD5 or RAD16-like Gene Family AT5G43530 68.539 6.09e-116 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere14g1760 SNF2_N 1.8e-76 CL0023