Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1730 ATGGCATATGAGAAGGATCTCATTCTCAAGGATACAGAGCTTAGATTGGGGTTGCCCGGTACAGAGAAGAGGGAAGAAGAACAATCACTGCCCAGTGCTAAGAACAAGAGGCCTTTGTCTGATGCTTCTGAAAACTGTGGATCAAAGGGTTCTAATGATTCAGCCCCTCCTGCCAAGGCAAAGATTGTGGGGTGGCCACCAATCAGATCCTACAGGAAGAACAGCCTGCAGGAGGCTGAGGCAACTGGGATCTATGTTAAAGTGAGTATGGATGGAGCTCCATACCTCAGAAAGATAGATTTGAAGGTTTACAGTGGCTATTCGGAACTCCTCAAAGCTCTAGAAAACATGTTCAAGTTAACCATAGGTCAGTACAATGAGAGAGAGGGCTACAAAGGGTCAGAATATGCACCTACATATGAGGACAAGGATGGTGATTGGATGCTTGTTGGAGATGTTCCATGGGATATGTTCATGACTTCCTGCAAAAGGCTGAGAATCATGAAAGGATCAGAAGCTAGAGGTTTGGGTTGTGGAGTCTGA 543 0.4567 MAYEKDLILKDTELRLGLPGTEKREEEQSLPSAKNKRPLSDASENCGSKGSNDSAPPAKAKIVGWPPIRSYRKNSLQEAEATGIYVKVSMDGAPYLRKIDLKVYSGYSELLKALENMFKLTIGQYNEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKGSEARGLGCGV 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1730 180 Pfam AUX/IAA family 48 177 IPR033389 -
Dere14g1730 180 MobiDBLite consensus disorder prediction 33 52 - -
Dere14g1730 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 174 IPR003311 GO:0005634|GO:0006355
Dere14g1730 180 ProSiteProfiles PB1 domain profile. 83 170 IPR000270 GO:0005515
Dere14g1730 180 MobiDBLite consensus disorder prediction 14 32 - -
Dere14g1730 180 Gene3D - 77 180 - -
Dere14g1730 180 FunFam Auxin-responsive protein 78 180 - -
Dere14g1730 180 MobiDBLite consensus disorder prediction 14 60 - -
Dere14g1730 180 SUPERFAMILY CAD & PB1 domains 74 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1730 Dere-ChrDere14 19874234 19875185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1730 67 176 B3 DNA Binding Superfamily AT2G46530 32.727 2.81e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere14g1730 AUX_IAA 1.8e-53 CL0072