Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1714 ATGGTGGGATTGGAACTCATTCCTGTGGGTACAATTCTGACTGTACTAACCAATCAGGTTCTGAAAACAGCTAATGCAGCAGCCGAAGTTCTTGTAGAGAAAGAAATTTTCAAGGTCCTTTCACAGCACCTGTATGATATTGAACCAGTCCTAAAGGAATTACAGCTACAAGAACTGAATGAGTCTCAAGCTGCAAGAACTGCACTGGAGTCTCTTGAAGAAGATGTCAAGAGAGCAAACAAAGTGGTTGAGAAGTACAGGAATCGTGGTCGTTTCTACTTGCTGGTTAAGTGCAGGCACATAGTTCATGAAGTCGAAGAAGTCACCAGAAGCATTGGAAAGTCCCTGGCTGTACTTTCTCTTGCAAATACCGAAGTCTTGTCTAGAATTTCTGATAAGGTCGATAGATTACAAGATGAGATGCAAAGGGTGGAGTTTGAGGCATCACAATCTCAGCTTCAGATTGTGGACAGGTTGAACCACGGCCTTCAGGAGCAGAAATTAGATCAGGCTTTTGCAAATAACATGCTTGAAGAAATTGCAAGAGCCGTAGGTGTATCTATAGAGCCCTCAGAGATAAGTAAAGAGCTAGCCAGTATTAGGAGGGAGAAAGAGGAAGCAGCTAACCGGAAAGAAAGAGCTGAGGAGTTCTTCTTGGAGCAAGTCATTGAGTTACTATCTCGAGCTGATGCTGCAAGAGATTATGAAGAAGTGAAGAAGCAATACTTTGAAAGTGTTCATATGATAGAGAGATTTGATTCAAGGGAAGAATATATACAGCCACTTAATTCTTTCCTTTGTTGCATAACTAGAACTGTTATGGTAGATCCAGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCCATTCAAGCTTGGTTTGACAGTGGCAACAGCACAGACCCAGAAACTAAAGAGTTACTCGAAGATGCTGAGTTGAGATCTAATGTTCCACTAAGACAGTCCATAGAGGAGTGGAGAGAACTTAATTATTGCCTTACAATCAGATCTATCAGGAAAAACCTTTTATCAGATTCTAACTTATCTGTGCAAGAATCCTTGAGCCAAGTGCAGGGTCTCATTAGAGAGAATTCTATAAACAAGGATTGGATTTCTATAGGAGAGGTTACTGACATTGTTATCTCTATCCTTGGGAACTCTAATAACAGAGAAATGAAGATTAAGATTTTGAGTACTTTGGATGATGTAGTAGCAGGGCATGCGAGAAACAAGGAGAAAGTAGCAGAGTCTCAAGGATGGTATCACATCATTTGCTGCTTGGGAAGTGACCCTGGCATTTCAAAGGCAGCAATTAATTTGCTGTATGAGTTACTGCAAGATCGATCTGGTTGGAATGTGTCTCTCTGCATAAAACTCTCTCAGCATCTTACTGCAATTTTTTTCCTTGTTCTCCTTCAAAAGGGTCCAGTGAAGGAGTCAGCTGAGGTTGCAGAAAAGATTTTGATGGAGCTTTTCAACATAGATGAGGTCAACATTTCTCGTGCTGCTCAGTTTGGCTGGTATAAACCGCTTGTTGATCGCATGGTTCAAGGAGTAGAGACTTCAAGAATATCAATGGCAAAAACCATTGTTAATTTGGAGCTTAGTGATTCAAATTTAAAACTCCTTGGGGAAGACGGAGCTATACCTCCTTTGCTTGAAATGTTGTCTGGCAGTATTGAATCAAAAGAACAATCATTATCTGCCCTGGTTAAACTATCAAGTATCCATGCCAATAAAGGGATTATAGCTGCATCTAGAGGAGTTCCTCTTATTCTAGAACTAATGTTCTCTCCTCGAAAGCAAACACTCATTACCATAAAATGCTCTGAAATCCTGGAGAAGCTTTCTGTTGATGATGGTGGAATTGATTTCTTTGTTGATGGAGAAGGTAAACAACTTGAGTTAGATTCCATTATCACCAACTTGCTTGCTCTTCAACAGAGTCCCAATTTAGCTCACAATATTCGTAGGCCTGCATTGCGTGCACTTCTCGGGATTTGCAAGTTTGAGACTGGTTTAGTCAAGAAGGCAGTCCTGGCTGGCAATGGTGTATCTCTAATCCTTCCCTTTCTTGATGACCCAGATTTAGAAGTCAGAGAGACTGCCATAAACCTGCTCTTTCTTTTCTCCCAACATGAGCCAGATGGAGTAGTTGAATACCTTTTTAGACCAAGAAGGTTGGAGGCATTAGTCAGGTTTCTTGAGACTGATGGTAATGATGTGCAGATGGCTGCTGCAGGTTTAATAGCAAACCTGCCAAAATCTGAAAGAGAGCTCACTATGAATCTGATTAAGTTGGGTGGACTTGACGCAATCATATGCATTTTACACACTGGAACAATGGAAGCAAAAGAAAATGCTCTTGGTGCACTCTTCAGGTTCACAGATCCCACAAACATCGAGTCACAACATGATTTGGTTAAACGTGGAATATATCCTTTGCTTGTGAATTTTCTCCATACTGGTTCAATAACAGCAAAGGCTAGAGCAGCAGCCTTAATTGGCAATCTTTCTATGAGCACTCCCAAACTCATAGTTACTGCCAAATCAAATGGTTGTTGGTGTTTTAGATCATCACGAGTTTTTTTATGTCCAGCACATGATAGTGTATGTAGTGTAAGTAACACATTTTGTCTCTTGGAAGCACAAGCTTTGCCTGGTTTGGCGAAGCTCTTACATGGGGAGGTTGATGTAACTGCTTATGAAGCAATACAAACACTTTCAACTTTAGTTTTGGAAGATTATCCTCAAAGGGGAGCTCGTGTTCTGCACAAATCAGATGCTATAAGACCCCTTCTGGAGATTTTGACATGGGGGTCCGATTCTTTGAAGGCAGAGGCTCTAGGACTCTTAGAGAAGGTGTTTTTATCAAAGGAAATGGTGGAACACTATGGCACAACTGCTAGATTGCGTCTTGTTGGCATAACAAGAATGAATATATATGGTGAGGGTCTCCTCAAGAAAAAAGCTGCTAAGGTATTATCATTGCTTGAACGTTATTCAAAGTCATTGTCTACTGTTGTCTCAGAGGTTTCAGAGTAG 3048 0.4098 MVGLELIPVGTILTVLTNQVLKTANAAAEVLVEKEIFKVLSQHLYDIEPVLKELQLQELNESQAARTALESLEEDVKRANKVVEKYRNRGRFYLLVKCRHIVHEVEEVTRSIGKSLAVLSLANTEVLSRISDKVDRLQDEMQRVEFEASQSQLQIVDRLNHGLQEQKLDQAFANNMLEEIARAVGVSIEPSEISKELASIRREKEEAANRKERAEEFFLEQVIELLSRADAARDYEEVKKQYFESVHMIERFDSREEYIQPLNSFLCCITRTVMVDPVSLCTGTTCERSAIQAWFDSGNSTDPETKELLEDAELRSNVPLRQSIEEWRELNYCLTIRSIRKNLLSDSNLSVQESLSQVQGLIRENSINKDWISIGEVTDIVISILGNSNNREMKIKILSTLDDVVAGHARNKEKVAESQGWYHIICCLGSDPGISKAAINLLYELLQDRSGWNVSLCIKLSQHLTAIFFLVLLQKGPVKESAEVAEKILMELFNIDEVNISRAAQFGWYKPLVDRMVQGVETSRISMAKTIVNLELSDSNLKLLGEDGAIPPLLEMLSGSIESKEQSLSALVKLSSIHANKGIIAASRGVPLILELMFSPRKQTLITIKCSEILEKLSVDDGGIDFFVDGEGKQLELDSIITNLLALQQSPNLAHNIRRPALRALLGICKFETGLVKKAVLAGNGVSLILPFLDDPDLEVRETAINLLFLFSQHEPDGVVEYLFRPRRLEALVRFLETDGNDVQMAAAGLIANLPKSERELTMNLIKLGGLDAIICILHTGTMEAKENALGALFRFTDPTNIESQHDLVKRGIYPLLVNFLHTGSITAKARAAALIGNLSMSTPKLIVTAKSNGCWCFRSSRVFLCPAHDSVCSVSNTFCLLEAQALPGLAKLLHGEVDVTAYEAIQTLSTLVLEDYPQRGARVLHKSDAIRPLLEILTWGSDSLKAEALGLLEKVFLSKEMVEHYGTTARLRLVGITRMNIYGEGLLKKKAAKVLSLLERYSKSLSTVVSEVSE 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1714 1015 CDD MLKL_NTD 20 145 - -
Dere14g1714 1015 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Dere14g1714 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 335 IPR013083 -
Dere14g1714 1015 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Dere14g1714 1015 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Dere14g1714 1015 Gene3D - 635 975 IPR011989 -
Dere14g1714 1015 Coils Coil 127 154 - -
Dere14g1714 1015 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 754 IPR000225 GO:0005515
Dere14g1714 1015 Gene3D - 336 634 IPR011989 -
Dere14g1714 1015 SUPERFAMILY RING/U-box 252 330 - -
Dere14g1714 1015 Coils Coil 62 89 - -
Dere14g1714 1015 Gene3D - 8 123 IPR036537 GO:0007166
Dere14g1714 1015 Pfam MCAfunc domain 24 154 IPR045766 -
Dere14g1714 1015 CDD RING-Ubox_PUB 265 314 IPR045210 -
Dere14g1714 1015 SMART arm_5 673 713 IPR000225 GO:0005515
Dere14g1714 1015 SMART arm_5 716 756 IPR000225 GO:0005515
Dere14g1714 1015 SMART arm_5 408 447 IPR000225 GO:0005515
Dere14g1714 1015 SMART arm_5 874 914 IPR000225 GO:0005515
Dere14g1714 1015 SMART arm_5 801 841 IPR000225 GO:0005515
Dere14g1714 1015 SMART arm_5 537 576 IPR000225 GO:0005515
Dere14g1714 1015 SMART arm_5 758 798 IPR000225 GO:0005515
Dere14g1714 1015 SMART arm_5 916 958 IPR000225 GO:0005515
Dere14g1714 1015 SUPERFAMILY ARM repeat 339 514 IPR016024 -
Dere14g1714 1015 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1005 - -
Dere14g1714 1015 Coils Coil 197 217 - -
Dere14g1714 1015 SUPERFAMILY ARM repeat 638 967 IPR016024 -
Dere14g1714 1015 SUPERFAMILY ARM repeat 482 715 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1714 Dere-ChrDere14 19466333 19470401 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1714 264 972 U-box Gene Family AT1G20780 26.579 5.78e-38 151