Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1628 ATGGAACCGGGCATGAGATCAGCTGGGCCTCCAGGGGTTGTAGTGAAGAACAGGAACTCTTCGGGCTGTTTAATTGTTAGAAAGAAAGGAGATGGCTTGGGTGGTGGATTTGGTTCTTCGAGCAGCTCTCGGAGGTTTTATGATTCAACGAAGGTCAGGAAAAGGCCCATTATGACTATGAGTGATTCAGAAGCAAGCGAGGAGTTGCCTATGCCCCCGAGTAGAAGGCTTGGTCCTGAGACTATTCGAGTCTGTAATGGTTTGACTGCTTTTGAGCGAGGTATGGTCGTAGGGAGTGAAATTGGTAGAAAGAGGGATAGAATGGAGCAAATCAGGCGTAATGAAGATGCCATGATTGAAAAGAATGGTTTGGAGCAGAGGGAAAGAAAGCGGAATAAAATGGACTTGTCTGATTTTGATGAACATGATGGCATGGATGTGGAAAAGATGCGAATGAGGAATTTTGATCATGATAATGGAGTTAGCTTTGGGGGACGAAGGTTTATGGGATCTATGCATGCTGCTAGAAGTGGCATTGAGAGAGAATTTGAGACAGGGTCAAGCAGACGCATTTTTTATACTAGAAAGAACTCCTATTATGACAGGACCAGTGGCTTTTATCTGGGAGATAATGTTGATACCAGCAGGTTCAAAGTGAACAGGGATGTCACTCGGCTTCCTCTACCCTTGCTGACAGAGAAGTTTAAATCAGATGAATCCATCAGGGTTCAGGGGAAAAATGGTGTTCTAAAGGTGATGGTTAAAAAGAAGGTGGGTGCCCCATTAGAACGCTATGATTACTGCAAACCTATTGAAAGCAGACAGAGTTTGAGGATTGAGGCCACTGCCAAGAGGAATATCCTGGTCCATCCTTCATCATACACAGAAACAAATCTTGTTGAGAACCCAGGTTTAGCTGTTGGGCCAGAGAAAAAACAGATAGCATCAAGAAAGTCATTGTCAAATAAGGACAGTAAGGGCCACAATTGGAATTCAGAGGATAGTGGCACATCATTGAATCTGGGAGAAGAAAATACTGGACCTTGCAAGTCCGTGAAGAGGGTAGGTTCTGAGGATGAACAGACTCCTTTGCATGAAAAGCTCCCAACTACAGTCATGAAAGAAGGAAAAGTGAGGCGTGGTAGCGGCACAGAAAAACAGAAACTGCGAGAAAAAATTAGGGAAATGCTTCTGAGTGCAGGTTGGACAATAGATTATCGGCCTCGAAGGAACAGAGACTATCTGGATGCAGTTTACATTAATCCAGGAGGTACTGCCTATTGGTCGATCATTAAAGCCTATGATGCTCTTCAAAAGCAATTGACTGATGATGATAATGAGGCCAAGCCCACGGGCAATGGCTCTTCATTTGCTCGAATCTCAGATGAGGTTCTGAGTCAATTAACAAGAAAAACTCGGAAAAAGATGGAGAAAGAAATGAAGAAGAAGCAAAGAGATGGTAGTGAGAGTGATAGTGAAAAAGAACCTGATCTTAAAAGATCTGCCAGCAACAAACATGATATAAATAGCATGGATAGTGATAGCAATGGGGATAAATTAAGCTCTATTATAAAGCAGGGAAGTAAGTCAATGATAAATAAGATGACAGAAAATGTTGTTGCCTGTGCCAGCTTCAAATCCCAGAAATCTACTCAGCACTTACATGATGGAACTGAAAATTCATTGTCTGGATGTGATCCTCTTCTACCACATGGAAGGAAAAGTAGAAAATATGGAAGATGTACTCTGTTAGTTCGTAGTTCTAACAAGGGATTAAATTCAGAATCTGATGGCTTTGTTCCGTATACTGGCAAAAGAACTGTACTTTCCTGGTTGATCGACTCTGGGACAGTTCAGTTGAGCCAAAAGGTTCAGTACCGTAGACGAAAACGAGTAATGCTGGAGGGATGGATCACAAGAGACGGCATTCATTGTGGCTGCTGCAGTAAAATCCTCACAGTTTCCAAGTTTGAGATTCATGCTGGAAGCAAATTGCGCCAGCCATTTCAGAACATATATTTGGATTCAGGAGTTTCTCTTCTACAGTGCCAAATAGATGCATGGAATAGACAAGAGAATTCTGATAAAATTATATTTCATTCAGTGGATATTGACGGTGATGATCCAAATGATGACACTTGCGGTATATGTGGAGATGGTGGGAATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATGCTTACTCCTGGTGAATGGCATTGTCCAAATTGCGCCTGCAAATTTTGTGGAATAGCCAATGGGTCTGTTGAAAAAGGAGATGATGCTACTGCATATGCTCTACTTACTTGCAACTTATGTGAGAAAAAATATCATGAATCTTGCGTTAAGGAGGTGGATGCCTTTCCTATCAATTCCAATATGTCAGGCTTTTCTTTCTGTGGAAAAGAGTGCAAGGAGCTTTTTGAGCACTTGAAGAAGTACCTAGGTACCAAGCATGAGCTAGAAGCAGGCTTTTCATGGTCTCTTATTCATAGAGCAGATGAAGACTCAGAGGCAGCTAGTAAAGGAATTTTTCAAAGGGTGGAAGGCAACTCCAAGCTAGCTGTTGCATTGACTGTCATGGATGAATGCTTTTTACCCATTGTTGACCGGAGGAGTGGGATCAATGTAATTCATAATGTTCTATATAATAGTGGGTCAAACTTCAGTAGGTTGAATTATAGTGGCTTTTACACTGCTATTTTGGAGAGGGGTGATGAAATAATTTCTGCAGCATCTATCAGGTTCCATGGGACTAGGGTAGTGGAGATGCCATTTATTGGAACTCGTCATATATACAGGCGTCAGGGAATGTGCCGCCGGCTTTTTTTTGCTATTGAATCGGCCCTCTGCTCTATGAAGGTTGAGAAAATGGTTATTCCTGCAATTGCTGAACTCTTGCAAACATGGACAGCAATTTTTGGCTTCACGCCTCTTGAGGATTCACTCTGGCAAGAAATGAGATCATTGAATATGCTGGTCTTCCCTGGTATAGACATGCTGCAGAAGTTGCTAATGGAGCGAGGAAAATTTGAGGGGAACACAATTGCTGCAGGTTCTGAGAAAATGGAAATTGGAGGCAAAGTTTATATCAAGCCAAAATTGGCTAATACGTCGGATGTGGATTCCTCAACTCAGCAAGATCCTGATGGAAGCGAAGACACTGATTTAAATCCTCCCGATGAGATAAATGATGAATGTAGTGATGCTTCTCAAGAACTAAACAATCAAGCGTTGTCTGACAGGACTATATGTTCTAAATCCCATTCTGAGGATAGGCTATCTGACTCAGCTTCAGATAAATGTTCTCCCTCTGGTACAAGTCACATTGCACTGGAGACGGAAAATAATGTAGCAGTGGGTTCTCCTGTGAAAGATGATTTGCATACAGCTAGAATGTGTCAGAGCATCTCTTTATATGATGCTTCTATGGATGTACATCCATTAGATGCTTTTGATTGCCCTGAAAATCGAACTTTGGTTCAGGGAACTGATAGTTCCAATCCTAATTCAACAAAAAACCTAGTTGAACTTGTGTCTGACAGGAAGTGTCACTTGCCCACTCCTTTAAATGGTAATTCATCTGAGCTTGAGATGAACAGGGTGTTACATTCTCAGGTGGTGGATAATACTGTGTCTTTTCGGGAGGTTGATATGAATAATTCTCATGAGGTTCATGAACCTGTTCCTTCAGAGGGTTTATCTGGAGAGACTATCACCAAGCGGAACTATGAAAATACTGATTTGTCTGATTCTGTACTCAATCATGCTGACGAGAGTTCCTTGCTAATGAGATCAGGTTTGAATGGTGAAACTATGTATGATGGTGAAAGAAATTTCTATCTAGGCACAGAATTTGCTTCAAATGAATTTCTTTCTGATGAAAATGGGATAAATACATCCAGTGATAGTTCTGAGACCGATTCAGAGTAA 3960 0.4157 MEPGMRSAGPPGVVVKNRNSSGCLIVRKKGDGLGGGFGSSSSSRRFYDSTKVRKRPIMTMSDSEASEELPMPPSRRLGPETIRVCNGLTAFERGMVVGSEIGRKRDRMEQIRRNEDAMIEKNGLEQRERKRNKMDLSDFDEHDGMDVEKMRMRNFDHDNGVSFGGRRFMGSMHAARSGIEREFETGSSRRIFYTRKNSYYDRTSGFYLGDNVDTSRFKVNRDVTRLPLPLLTEKFKSDESIRVQGKNGVLKVMVKKKVGAPLERYDYCKPIESRQSLRIEATAKRNILVHPSSYTETNLVENPGLAVGPEKKQIASRKSLSNKDSKGHNWNSEDSGTSLNLGEENTGPCKSVKRVGSEDEQTPLHEKLPTTVMKEGKVRRGSGTEKQKLREKIREMLLSAGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLTDDDNEAKPTGNGSSFARISDEVLSQLTRKTRKKMEKEMKKKQRDGSESDSEKEPDLKRSASNKHDINSMDSDSNGDKLSSIIKQGSKSMINKMTENVVACASFKSQKSTQHLHDGTENSLSGCDPLLPHGRKSRKYGRCTLLVRSSNKGLNSESDGFVPYTGKRTVLSWLIDSGTVQLSQKVQYRRRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNRQENSDKIIFHSVDIDGDDPNDDTCGICGDGGNLICCDGCPSTFHQSCLDIQMLTPGEWHCPNCACKFCGIANGSVEKGDDATAYALLTCNLCEKKYHESCVKEVDAFPINSNMSGFSFCGKECKELFEHLKKYLGTKHELEAGFSWSLIHRADEDSEAASKGIFQRVEGNSKLAVALTVMDECFLPIVDRRSGINVIHNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTRVVEMPFIGTRHIYRRQGMCRRLFFAIESALCSMKVEKMVIPAIAELLQTWTAIFGFTPLEDSLWQEMRSLNMLVFPGIDMLQKLLMERGKFEGNTIAAGSEKMEIGGKVYIKPKLANTSDVDSSTQQDPDGSEDTDLNPPDEINDECSDASQELNNQALSDRTICSKSHSEDRLSDSASDKCSPSGTSHIALETENNVAVGSPVKDDLHTARMCQSISLYDASMDVHPLDAFDCPENRTLVQGTDSSNPNSTKNLVELVSDRKCHLPTPLNGNSSELEMNRVLHSQVVDNTVSFREVDMNNSHEVHEPVPSEGLSGETITKRNYENTDLSDSVLNHADESSLLMRSGLNGETMYDGERNFYLGTEFASNEFLSDENGINTSSDSSETDSE 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1628 1319 MobiDBLite consensus disorder prediction 331 345 - -
Dere14g1628 1319 MobiDBLite consensus disorder prediction 1045 1075 - -
Dere14g1628 1319 SUPERFAMILY FYVE/PHD zinc finger 700 759 IPR011011 -
Dere14g1628 1319 MobiDBLite consensus disorder prediction 1096 1123 - -
Dere14g1628 1319 MobiDBLite consensus disorder prediction 1300 1319 - -
Dere14g1628 1319 MobiDBLite consensus disorder prediction 59 79 - -
Dere14g1628 1319 CDD PHD2_CHD_II 714 753 - -
Dere14g1628 1319 Coils Coil 466 486 - -
Dere14g1628 1319 MobiDBLite consensus disorder prediction 316 330 - -
Dere14g1628 1319 ProSiteProfiles Zinc finger PHD-type profile. 711 756 IPR019787 -
Dere14g1628 1319 MobiDBLite consensus disorder prediction 447 465 - -
Dere14g1628 1319 MobiDBLite consensus disorder prediction 466 513 - -
Dere14g1628 1319 PANTHER PHD FINGER PROTEIN 12 370 1108 IPR042163 GO:0003714|GO:0045892
Dere14g1628 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 773 IPR013083 -
Dere14g1628 1319 MobiDBLite consensus disorder prediction 444 521 - -
Dere14g1628 1319 Pfam Tify domain binding domain 636 686 IPR032308 -
Dere14g1628 1319 Pfam PHD-finger 714 756 IPR019787 -
Dere14g1628 1319 MobiDBLite consensus disorder prediction 300 362 - -
Dere14g1628 1319 SMART PHD_3 755 814 IPR001965 -
Dere14g1628 1319 SMART PHD_3 713 754 IPR001965 -
Dere14g1628 1319 MobiDBLite consensus disorder prediction 1108 1123 - -
Dere14g1628 1319 MobiDBLite consensus disorder prediction 1046 1062 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1628 Dere-ChrDere14 17991794 17999181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1628 4 1015 PHD Transcription Factor Family AT4G14920 50.485 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere14g1628 TDBD 1.1e-21 No_clan