Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1611 ATGCCTCCGCTTCATAGCGGATTAGCCCCTTGCTCTCGATCTAGTTCTCTCATTTCCTTTGCATTACGAGTACTGTCTCAGCGAGAGGCCTTCTTCTGCTTCTTCTTCTTCCTGTTCATGGAGCTTCAGAGGCGCCAGGATCAGGGCTTCCCTGAGAGGAAAGGACAGAAGCGGAAGCTGGAGGTGGAATTGGAAGAGGAGTCCGAGATCCCGGCGCCCCCGCCTACCGGCGACGCCCGTGAGGCGTTGCTCGCCGAGGTGACGGCGCAGGTTGATATCCTCGACTCCACTTTCTCGTGGAAGGAATCCGATCGTGCCGCGGCTAAGCGCGCCACTCACGTGCTCGCTGAACTTGCCAAGAATGAAGAAGTAGTGAACGTGATTGTTGAAGGAGGCGCAATTCCGGCTTTGGTTAAGCATCTTCAAGCGCCTCCTTTGAGTGAAAACGATCGTGGTCAGAAGCCATTTGAACACGAGGTTGAGAAAGGGAGTGCTTTTGCTCTTGGACTTCTTGCCGTCAAGCCAGAACATCAACAACTCATTGTTGACAATGGTGCCTTAAAACATCTTGTTGATCTGTTAAAGAGGCATAATAATAGCTCTACTTCTCGTGCTGTGAATAGTGTCATTCGTAGGGCTGCAGATGCCATCACTAATCTTGCTCATGAAAACAGTAACATCAAAACCTGTGTCAGGATTGAAGGTGGGATTCCGCCACTTGTTGAGATGCTTGAATTCACTGATACGAAGGTTCAAAGAGCAGCTGCTGGTGCTCTGCGTACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGATTGCAATGCTCTTCCAACTCTGATTCTAATGCTTCGTTCGGAAGATCCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGGAATCTTGTACACTCTTCTCCTAATATAAAGAAAGAAGTTATTCTAGCTGGAGCTTTACAACCTGTGATTGGATTACTTCGATCCTGCTGCTCTGAGAGCCAAAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCCACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTTCCACCTCTAATAGAGATGCTTCAGTCTCCTGACGTGCAGCTCAGAGAAATGTCTGCCTTTGCATTGGGGCGATTGGCACAGGACATACATAACCAAGCTGGTATTGCATATAATGGTGGCATAATGCCATTACTGAAGCTTCTTGATTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGTGTTCAGAGACTGCAGGATGGGGAATTTACTGTTCAGGCAACAAAAGATTGTGTTGCGAAGACCTTGAAAAGATTAGAGGAAAAGATACATGGCCGTGTCCTGAATCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGCTGTCCAAAGACGAGTTGCTTTAGCTCTTGCTCATCTTTGTTCTGTGGATGATCAGAGAATAATATTCATTGATAACAATGGTTTGGAGTTGCTTATTGGGCTTCTTGGCTCTTCTAGCACAAAGCAGCAACTTGATGGTGCCATAGCTTTATGCAAGTTGGCCAACAAAGCCATGACTCTATCCCCCATTGACGGAGCTCCCCCTTCTCCAACACCCCAGGTTTATTTGGGTGAGCAGTATGTTAACAGTGCTACATTGTCTGATGTGACGTTTTTGGTTGAAGGAAAACGGTTTTATGCTCACAGAATCTGCCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGATATAGAGATTCCAAATATAAGATGGGAGGTTTTTGAGCTCATGATGAGATTCATATATACTGGATCTATTGATGTTACTCTGGACATTGCTCAAGATCTCCTTCGAGCAGCTGATCAATATCTCCTAGAAGGACTTAAGAGACTCTGCGAGTACACAATTGCTCAGGATATATCACTAGACAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTTAATGCAATATCATTGAGGAACACCTGCATCCTTTATATCCTGGAGCAGTATGATAAACTGAGTGCAAAGCCAGGGCACTCTCATCTGATTCAGCGCATTATACCAGAGATGCGCTATTACTTCGCGAAAGCACTTAAGAAGACTAATTCCCATAATGTCCGATTGTAG 2238 0.4491 MPPLHSGLAPCSRSSSLISFALRVLSQREAFFCFFFFLFMELQRRQDQGFPERKGQKRKLEVELEEESEIPAPPPTGDAREALLAEVTAQVDILDSTFSWKESDRAAAKRATHVLAELAKNEEVVNVIVEGGAIPALVKHLQAPPLSENDRGQKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHNNSSTSRAVNSVIRRAADAITNLAHENSNIKTCVRIEGGIPPLVEMLEFTDTKVQRAAAGALRTLAFKNDENKNQIVDCNALPTLILMLRSEDPAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLLRSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVPPLIEMLQSPDVQLREMSAFALGRLAQDIHNQAGIAYNGGIMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFTVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAVQRRVALALAHLCSVDDQRIIFIDNNGLELLIGLLGSSSTKQQLDGAIALCKLANKAMTLSPIDGAPPSPTPQVYLGEQYVNSATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSIDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLDNVSSMYELSEAFNAISLRNTCILYILEQYDKLSAKPGHSHLIQRIIPEMRYYFAKALKKTNSHNVRL 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1611 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 270 IPR000225 GO:0005515
Dere14g1611 745 MobiDBLite consensus disorder prediction 50 77 - -
Dere14g1611 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 361 403 IPR000225 GO:0005515
Dere14g1611 745 SUPERFAMILY ARM repeat 102 449 IPR016024 -
Dere14g1611 745 MobiDBLite consensus disorder prediction 50 66 - -
Dere14g1611 745 Gene3D - 392 467 IPR011989 -
Dere14g1611 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 132 186 IPR000225 GO:0005515
Dere14g1611 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 277 319 IPR000225 GO:0005515
Dere14g1611 745 ProSiteProfiles BTB domain profile. 578 645 IPR000210 GO:0005515
Dere14g1611 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 235 IPR000225 GO:0005515
Dere14g1611 745 Pfam BTB/POZ domain 571 673 IPR000210 GO:0005515
Dere14g1611 745 Gene3D - 468 553 IPR011989 -
Dere14g1611 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 402 444 IPR000225 GO:0005515
Dere14g1611 745 SUPERFAMILY ARM repeat 476 547 IPR016024 -
Dere14g1611 745 SUPERFAMILY POZ domain 570 672 IPR011333 -
Dere14g1611 745 Gene3D Potassium Channel Kv1.1; Chain A 564 704 IPR011333 -
Dere14g1611 745 SMART arm_5 174 222 IPR000225 GO:0005515
Dere14g1611 745 SMART arm_5 505 546 IPR000225 GO:0005515
Dere14g1611 745 SMART arm_5 391 431 IPR000225 GO:0005515
Dere14g1611 745 SMART arm_5 121 173 IPR000225 GO:0005515
Dere14g1611 745 SMART arm_5 266 306 IPR000225 GO:0005515
Dere14g1611 745 SMART arm_5 224 264 IPR000225 GO:0005515
Dere14g1611 745 SMART arm_5 308 348 IPR000225 GO:0005515
Dere14g1611 745 SMART arm_5 350 390 IPR000225 GO:0005515
Dere14g1611 745 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 40 739 IPR044282 -
Dere14g1611 745 Pfam Armadillo/beta-catenin-like repeat 266 305 IPR000225 GO:0005515
Dere14g1611 745 Pfam Armadillo/beta-catenin-like repeat 228 263 IPR000225 GO:0005515
Dere14g1611 745 Pfam Armadillo/beta-catenin-like repeat 350 389 IPR000225 GO:0005515
Dere14g1611 745 SMART BTB_4 578 675 IPR000210 GO:0005515
Dere14g1611 745 CDD BTB_POZ_ARIA_plant 565 680 - -
Dere14g1611 745 Gene3D - 84 391 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1611 Dere-ChrDere14 17732192 17739272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1611 334 448 U-box Gene Family AT3G46510 29.565 2.92e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere14g1611 BTB 7.6e-26 CL0033